Detail information of GWHGAAZE026558


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009785069.12.27484E-30PREDICTED: anaphase-promoting complex subunit 1-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9FFF9|APC1_ARATH3E-19Anaphase-promoting complex subunit 1
trEMBLtr|W9RFE4|W9RFE4_9ROSA3E-29Anaphase-promoting complex subunit 1 {ECO:0000313|EMBL:EXB88405.1}
TAIR10AT5G05560.12E-17E3 ubiquitin ligase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene64913556493243+
GWHAAZE00000008mRNA64913556493243+
GWHAAZE00000008exon64913556491713+
GWHAAZE00000008exon64931736493243+
GWHAAZE00000008five_prime_UTR64913556491490+
GWHAAZE00000008CDS64914916491713+
GWHAAZE00000008CDS64931736493243+
Transcript Sequence

Network for GWHGAAZE026558

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03348APC1 Ubiquitin mediated proteolysis map04120
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.094
SRR3591706second leaf1.505
SRR3591707mature leaf2.160
SRR3591708Shoot apex3.367
SRR3591709Stem2.427
SRR3591710White floral bud0.474
SRR3591711White flower1.520
SRR3591712Green floral bud2.198
SRR3591713Yellow flower0.602
SRP173429 SRR8316895Juvenile bud stage 1.407
SRR8316896Juvenile bud stage 2.884
SRR8316897Juvenile bud stage 1.629
SRR8316894Third green stage 1.640
SRR8316900Third green stage 3.229
SRR8316901Third green stage 4.171
SRR8316898Complete white stage 0.656
SRR8316899Complete white stage 1.966
SRR8316903Complete white stage 0.931
SRR8316902Silver flowering stage0.259
SRR8316904Silver flowering stage0.764
SRR8316905Silver flowering stage0.311
SRR8316906Gold flowering stage 1.205
SRR8316907Gold flowering stage 0.380
SRR8316908Gold flowering stage 0.754
SRP132670SRR6706286Control8.304
SRR6706287Light intensity 50%7.727
SRR6706288Light intensity 20%7.419
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.895
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.367
CNS0095595Whole white alabastrum(diploid) 20.103
CNS0095596Whole white alabastrum(diploid) 30.347
CNS0095597Whole white alabastrum(diploid) 40.015
CNS0095598Silvery flower (diploied) 10.449
CNS0095599Silvery flower (diploied) 20.243
CNS0095600Silvery flower (diploied) 30.537
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 21.816
CNS0095603Golden flower (diploid) 31.518
CNS0095604Slightly white alabastrum(tetraploid) 10.287
CNS0095605Slightly white alabastrum(tetraploid) 20.252
CNS0095606Slightly white alabastrum(tetraploid) 31.751
CNS0095607Whole white alabastrum(tetraploid) 10.789
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 31.275
CNS0095610Silvery flower (tetraploid) 11.295
CNS0095611Silvery flower (tetraploid) 21.581
CNS0095612Silvery flower (tetraploid) 30.726
CNS0095613Golden flower (tetraploid) 10.159
CNS0095614Golden flower (tetraploid) 20.568
CNS0095615Golden flower (tetraploid) 30.804
CRA001975CRR073297Stem 12.521
CRR073298Stem 22.009
CRR073299Stem 32.626
CRR073300Leaf 14.244
CRR073301Leaf 22.068
CRR073302Leaf 30.923
CRR073303Juvenile bud 10.576
CRR073304Juvenile bud 20.284
CRR073305Juvenile bud 31.268
CRR073306Third green 10.285
CRR073307Third green 20.130
CRR073308Third green 30.635
CRR073309Second white 10.369
CRR073310Second white 20.519
CRR073311Second white 30.358
CRR073312Silver flowering 10.656
CRR073313Silver flowering 20.793
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.121
CRR073317Gold flowering 30.196
CRR073318Tawny withering 12.065
CRR073319Tawny withering 21.284
CRR073320Tawny withering 30.237