Gene detail

Detail information of GWHGAAZE026560

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI25461.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9FFF9\|APC1_ARATH	Anaphase-promoting complex subunit 1
trEMBL	tr\|W9RQW6\|W9RQW6_9ROSA	Anaphase-promoting complex subunit 1 {ECO:0000313\|EMBL:EXB88404.1}
TAIR10	AT5G05560.1	E3 ubiquitin ligase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6520814	6543709	+
GWHAAZE00000008	mRNA	6520814	6543709	+
GWHAAZE00000008	exon	6520814	6520957	+
GWHAAZE00000008	exon	6523161	6523438	+
GWHAAZE00000008	exon	6523598	6524057	+
GWHAAZE00000008	exon	6525838	6526179	+
GWHAAZE00000008	exon	6529454	6529537	+
GWHAAZE00000008	exon	6534447	6534524	+
GWHAAZE00000008	exon	6534679	6534738	+
GWHAAZE00000008	exon	6535037	6535135	+
GWHAAZE00000008	exon	6535448	6535588	+
GWHAAZE00000008	exon	6539477	6539557	+
GWHAAZE00000008	exon	6541524	6541595	+
GWHAAZE00000008	exon	6542625	6542718	+
GWHAAZE00000008	exon	6542795	6542898	+
GWHAAZE00000008	exon	6542972	6543028	+
GWHAAZE00000008	exon	6543116	6543193	+
GWHAAZE00000008	exon	6543330	6543451	+
GWHAAZE00000008	exon	6543544	6543709	+
GWHAAZE00000008	CDS	6520814	6520957	+
GWHAAZE00000008	CDS	6523161	6523438	+
GWHAAZE00000008	CDS	6523598	6524057	+
GWHAAZE00000008	CDS	6525838	6526179	+
GWHAAZE00000008	CDS	6529454	6529537	+
GWHAAZE00000008	CDS	6534447	6534524	+
GWHAAZE00000008	CDS	6534679	6534738	+
GWHAAZE00000008	CDS	6535037	6535135	+
GWHAAZE00000008	CDS	6535448	6535588	+
GWHAAZE00000008	CDS	6539477	6539557	+
GWHAAZE00000008	CDS	6541524	6541595	+
GWHAAZE00000008	CDS	6542625	6542718	+
GWHAAZE00000008	CDS	6542795	6542898	+
GWHAAZE00000008	CDS	6542972	6543028	+
GWHAAZE00000008	CDS	6543116	6543193	+
GWHAAZE00000008	CDS	6543330	6543451	+
GWHAAZE00000008	CDS	6543544	6543709	+

Transcript Sequence
>GWHTAAZE026594 ATGCTCCCTCCTGTTTTGGGTAAATGTGAAGTTTCACATAGTTTGAAGCCTTTGGAAACAACATCTGTTCTTCCAGATCTAAAAGTTGTTGGATTGGCTGACGCTGTTGAAGGGCGGATCAATGTGATTGTAAACAATGGACAGTCTAGGCCCATCAATAAAAGGCTTTCAGATCCAGTTTCAGCATCATCATGGGAGTTTCTTATCAACAGCCAATTTCACAAGAAATATAGTAAAACTAGTTTTGCTAGTGGAATTACTCCTATATTACCACGTGATATTAACGGATATGATTCCCCTTCTTTACATATAGATGGCACACAAGTTCTAGAAAAGTCATCTTACTCCGAGCTTTTGACGGAGGCTCTTGATTCTTTGCATGCAGTATATGAGAATCTGAAACTAGATAATCTTCGCAAAAGGGATGTGGGTCTCCTTGTGGTTCTATTGTGTGATATTGCCGATTTCTTGGGCGAAGAAATCTATCTGGACCATTATATACGCGACTTTCCTGGTCTTTCCAAAAGCTTTGCGATGCACAGTACCTCAATTTTACATAAAACTCCTCCTAGTTTATTCAGATGGCTCGAAAACTGTGTGCAACATGGATATAATTCTGCTAATATATGTGACCTTCCACATCTGATTTGTAAAGATGGAAGTGCGGTTGTGAATTGGGCCCGCAAGATAGTCTCCTTCTATAGTCTTTTATGCGGTGCAGAACAATTAGGGAGGAAGCTGTCAACTGGTGTTTATTGTAATGTAGCCACCGGAACATCTTTTAGTAATGAGGAGCTAACAGTCTTGGCAATGGTTGGGGAAAGATTTGGTTTGCAACAGCTGGACTTGCTGCCTGCTGGTGTATCTCTCCCTCTACGTCACGCATTGGACAAGTGTCGGGAGTCGCCTCCTACTGACTGGCCTGCTGCTGCATATGTTCTTCTTGGTCGGGAAGATCTAGCATTGTCTTGCTTGGCACATTCAAGCAAATCCAAGGAATTTGAACCCCACACCAATCTGAACTTAATTTCTATGTCTACACCTTACATGTTACATCTACATCCAGTGACAATTCCTTCCTCCATTTCTGATACAACTGGATTGGAGAATACCAACAAGCTTGATGATACAGATTCTGCCGATGGATCTATAATTGATGGCATGGAACACATTTTCAACTCCAGCACGCAGTTGCGGTATGGTCGTGATTTGCGATTAAATGAGGTTAGACGTCTTTTGTGCTCTGCAAGACCCGTTGCAATTCAAACACCAGTTAACCCTACAGCTTCTGATCAGGACCTTCAGCAGCTTGCTCATAGGACAAGTGCTCTTCCTATTGGCCGCGGGGCATTTACTCTTGCAACCACTTGTACTCTTTTGACTGAGGCACTCACCGTTCCCAAGCTTGTCTTAGCAGGTCGGTTGCCTGCCCAACAAAATGCAACGGTTAATCTAGATCCAAATATTAGGAATATACAGGAACTCAAATCTTGGCCTGAGTTTCACAATGCTGTGGCAGCTGGATTAAGACTGGCTCCCCTCCAGGGAAAAATGTCAAGAACATGGATAATTTACAACAAACCTGAAGAGCCAAATGTTATTCATGCAGGACTTCTCCTTGCATTGGGGTTGCATGGACATCTATGTGTTTTGACTATAACTGACATATACCAATACTATTCACTGGAACATGAGAGCACAACTGTAGGATTGATGCTTGGACTTGCAGCATCTTATAGGGGAACTATGCAACCAGCAATATCAAAGTCAGCAGCACTGATGTCTGTTGGGCTTCTTTATGAGGGATCAGCACACCCCCAAACAATGCAGATTCTTCTGGGTGAAATAGGTCGTAGAAGTGGAGGCGATAATGTACTTGAAAGGGAGGGTTATGCAGTTTCGGCTGGATTTTCACTCGGACTTGTTGCCTTGGGTCGTGGTGAAGATGCACTCGGTTTTCTGGATATTTTGGTCGATCGATTGTTCCAATACATTGGAGGCAAAGAACTTCAAAATGTACATCATGTTGCAGCATTTGATAAATATGTTCTTTTGACGTCATCAAAAGATGAACATGGTCGCAGTGTGGGGCAGATGATGGATGGGACCTGTATTAATGTTGATGTTACAGCGCCTGGTGCTATTGTTGCTCTTGCTCTGATGTACTTAAAGACAGAATCGGAGGTGATAGTGTCTAGGCTCTCCATTCCGCACACCCATTTTGAATTGCAATATGTGAGACCTGACTTTATAATGCTTCGTGTCATTGCTCGGAATTTGATATTGTGGAGCAGGGTTCATCCATCTGAAGATTGGATTCAATCCCAGATCCCTGAAATTGTACAAAATGGTGTGAAATGCCTCGGTGATGAGATGGATGATATAGATGAAATGGATATTGAAGCATCTGTGCAGGCATATGTGAATATAGTTGCTGGAGGAAGCATTTCGCTTCAGTAA

Network for GWHGAAZE026560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03348	APC1	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.910
	SRR3591706	second leaf	2.698
	SRR3591707	mature leaf	2.525
	SRR3591708	Shoot apex	8.981
	SRR3591709	Stem	4.894
	SRR3591710	White floral bud	3.044
	SRR3591711	White flower	3.593
	SRR3591712	Green floral bud	3.248
	SRR3591713	Yellow flower	2.088
SRP173429	SRR8316895	Juvenile bud stage	2.840
	SRR8316896	Juvenile bud stage	3.498
	SRR8316897	Juvenile bud stage	1.770
	SRR8316894	Third green stage	2.126
	SRR8316900	Third green stage	4.168
	SRR8316901	Third green stage	3.712
	SRR8316898	Complete white stage	0.696
	SRR8316899	Complete white stage	3.218
	SRR8316903	Complete white stage	1.967
	SRR8316902	Silver flowering stage	0.777
	SRR8316904	Silver flowering stage	1.602
	SRR8316905	Silver flowering stage	0.505
	SRR8316906	Gold flowering stage	1.816
	SRR8316907	Gold flowering stage	1.950
	SRR8316908	Gold flowering stage	1.880
SRP132670	SRR6706286	Control	3.145
	SRR6706287	Light intensity 50%	4.168
	SRR6706288	Light intensity 20%	4.067
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.662
	CNS0095593	Slightly white alabastrum(diploid) 2	0.778
	CNS0095594	Slightly white alabastrum(diploid) 3	0.850
	CNS0095595	Whole white alabastrum(diploid) 2	1.062
	CNS0095596	Whole white alabastrum(diploid) 3	0.516
	CNS0095597	Whole white alabastrum(diploid) 4	1.412
	CNS0095598	Silvery flower (diploied) 1	2.058
	CNS0095599	Silvery flower (diploied) 2	1.346
	CNS0095600	Silvery flower (diploied) 3	2.879
	CNS0095601	Golden flower (diploid) 1	1.490
	CNS0095602	Golden flower (diploid) 2	2.916
	CNS0095603	Golden flower (diploid) 3	2.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.487
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.557
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.448
	CNS0095610	Silvery flower (tetraploid) 1	2.554
	CNS0095611	Silvery flower (tetraploid) 2	1.947
	CNS0095612	Silvery flower (tetraploid) 3	1.224
	CNS0095613	Golden flower (tetraploid) 1	0.723
	CNS0095614	Golden flower (tetraploid) 2	1.546
	CNS0095615	Golden flower (tetraploid) 3	1.277
CRA001975	CRR073297	Stem 1	3.886
	CRR073298	Stem 2	3.152
	CRR073299	Stem 3	2.161
	CRR073300	Leaf 1	3.526
	CRR073301	Leaf 2	2.752
	CRR073302	Leaf 3	1.798
	CRR073303	Juvenile bud 1	1.229
	CRR073304	Juvenile bud 2	0.802
	CRR073305	Juvenile bud 3	2.498
	CRR073306	Third green 1	0.294
	CRR073307	Third green 2	0.156
	CRR073308	Third green 3	0.455
	CRR073309	Second white 1	0.496
	CRR073310	Second white 2	0.725
	CRR073311	Second white 3	0.356
	CRR073312	Silver flowering 1	0.346
	CRR073313	Silver flowering 2	0.415
	CRR073314	Silver flowering 3	0.507
	CRR073315	Gold flowering 1	0.393
	CRR073316	Gold flowering 2	1.645
	CRR073317	Gold flowering 3	0.484
	CRR073318	Tawny withering 1	1.777
	CRR073319	Tawny withering 2	1.254
	CRR073320	Tawny withering 3	2.501