Gene detail

Detail information of GWHGAAZE026561

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007221029.1	1.6293E-152	hypothetical protein PRUPE_ppa000101m2g, partial [Prunus persica]
Swissprot	tr\|Q9FFF9\|APC1_ARATH	7E-111	Anaphase-promoting complex subunit 1
trEMBL	tr\|M5XL27\|M5XL27_PRUPE	6E-153	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22228.1} (Fragment)
TAIR10	AT5G05560.1	1E-86	E3 ubiquitin ligase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6544580	6550234	+
GWHAAZE00000008	mRNA	6544580	6550234	+
GWHAAZE00000008	exon	6544580	6544747	+
GWHAAZE00000008	exon	6544995	6545120	+
GWHAAZE00000008	exon	6545840	6545980	+
GWHAAZE00000008	exon	6547099	6547272	+
GWHAAZE00000008	exon	6547771	6547834	+
GWHAAZE00000008	exon	6547913	6548020	+
GWHAAZE00000008	exon	6550056	6550234	+
GWHAAZE00000008	CDS	6544580	6544747	+
GWHAAZE00000008	CDS	6544995	6545120	+
GWHAAZE00000008	CDS	6545840	6545980	+
GWHAAZE00000008	CDS	6547099	6547272	+
GWHAAZE00000008	CDS	6547771	6547834	+
GWHAAZE00000008	CDS	6547913	6548020	+
GWHAAZE00000008	CDS	6550056	6550234	+

Transcript Sequence
>GWHTAAZE026595 ATGCAATTTACTCTTAACTTCTTTATTCTATGTCCGCAGATAAAACCTGTGTCTGTGACAAGTAGACATGCCTTTCCAAAGGGATTGTATCGCTATGTTGATCGGGGCACACTGGAGACATGTCTTCACCTCATTGTCCTTTCCCTGTCTGTGGTCAGTGGATTTTTGGTTATGGCAGGTTCTGGGCATCTTCAAACGTTTAGATTGTTAAGGTTTCTTCGTAGTCGAAATTCTGCTGATGGGCACGTTAATTACGGCACGCAGTTGGCGGTAAGTTTTGCTATAACTCTTAGGGTAAGCTTAGCCACTGGTTTCTTATTTCTTGGGGGTGGAATGCGTACATTCTCAACTAGCAACAGTTCTTTAGCTGCTTTGCTAATAACTCTTTATCCACGCTTGCCCACTGGGCCAAATGACAATCGATGCCACCTCCAGGCATTCAGGCATCTATATGTACTTGCAACGGAAGCACGGTGGGTTCAAACGGTTGATGTAGACACAGGTTTACCAGTTTATGCCCCTCTTGATGTTACAATTAAGGAAACTGAACATTATGGAGAGACAAGTTTCTGTGAAGTCACACCTACCATTCTTCCTGAACGTGCTAGTTTAAAGACTGTTCGTGTTTGTGGTCCCCGATACTGGCCACAAGTCATTGAACTTAATCCTGAAGAGAAACCATGGTGGATTCCCGGGGACAAGAGCGATCCATTTAACTCTGGTGTCCTCTATATCAAGCGAAAAGTTGGAGCTTGCTCATATGTAGATGATCCCGTAGGATGTGCTTGGTTTAACAAGTTTGAAAACATGTACCCAAGTAACAATGATGGTGGTGGTGGTGTAGCCACAGTTGATCATTTGGTCAGTACCTTCTCATCGGACCCAAGCTTAATTGCTTTTGCTCAACTCTGCAGTAACCATTCCTGGAATAGCAGGCAAGTTAAGAGTGTTATGTTGTAA

Network for GWHGAAZE026561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03348	APC1	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.452
	SRR3591706	second leaf	3.397
	SRR3591707	mature leaf	4.495
	SRR3591708	Shoot apex	18.231
	SRR3591709	Stem	6.449
	SRR3591710	White floral bud	5.459
	SRR3591711	White flower	4.808
	SRR3591712	Green floral bud	5.408
	SRR3591713	Yellow flower	2.269
SRP173429	SRR8316895	Juvenile bud stage	5.460
	SRR8316896	Juvenile bud stage	7.183
	SRR8316897	Juvenile bud stage	3.328
	SRR8316894	Third green stage	2.724
	SRR8316900	Third green stage	7.307
	SRR8316901	Third green stage	5.889
	SRR8316898	Complete white stage	0.910
	SRR8316899	Complete white stage	6.832
	SRR8316903	Complete white stage	1.995
	SRR8316902	Silver flowering stage	1.303
	SRR8316904	Silver flowering stage	1.654
	SRR8316905	Silver flowering stage	0.582
	SRR8316906	Gold flowering stage	2.391
	SRR8316907	Gold flowering stage	2.521
	SRR8316908	Gold flowering stage	2.416
SRP132670	SRR6706286	Control	5.839
	SRR6706287	Light intensity 50%	6.821
	SRR6706288	Light intensity 20%	6.661
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.461
	CNS0095593	Slightly white alabastrum(diploid) 2	3.817
	CNS0095594	Slightly white alabastrum(diploid) 3	2.358
	CNS0095595	Whole white alabastrum(diploid) 2	2.874
	CNS0095596	Whole white alabastrum(diploid) 3	2.505
	CNS0095597	Whole white alabastrum(diploid) 4	1.865
	CNS0095598	Silvery flower (diploied) 1	6.193
	CNS0095599	Silvery flower (diploied) 2	3.810
	CNS0095600	Silvery flower (diploied) 3	3.952
	CNS0095601	Golden flower (diploid) 1	3.802
	CNS0095602	Golden flower (diploid) 2	3.806
	CNS0095603	Golden flower (diploid) 3	2.789
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.742
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.463
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.685
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.761
	CNS0095610	Silvery flower (tetraploid) 1	3.611
	CNS0095611	Silvery flower (tetraploid) 2	2.880
	CNS0095612	Silvery flower (tetraploid) 3	2.765
	CNS0095613	Golden flower (tetraploid) 1	1.929
	CNS0095614	Golden flower (tetraploid) 2	2.408
	CNS0095615	Golden flower (tetraploid) 3	1.216
CRA001975	CRR073297	Stem 1	9.473
	CRR073298	Stem 2	7.316
	CRR073299	Stem 3	6.244
	CRR073300	Leaf 1	8.296
	CRR073301	Leaf 2	7.284
	CRR073302	Leaf 3	3.690
	CRR073303	Juvenile bud 1	4.239
	CRR073304	Juvenile bud 2	2.788
	CRR073305	Juvenile bud 3	4.970
	CRR073306	Third green 1	0.515
	CRR073307	Third green 2	0.055
	CRR073308	Third green 3	0.938
	CRR073309	Second white 1	0.469
	CRR073310	Second white 2	1.950
	CRR073311	Second white 3	0.729
	CRR073312	Silver flowering 1	0.535
	CRR073313	Silver flowering 2	0.875
	CRR073314	Silver flowering 3	0.862
	CRR073315	Gold flowering 1	0.057
	CRR073316	Gold flowering 2	2.849
	CRR073317	Gold flowering 3	1.415
	CRR073318	Tawny withering 1	6.038
	CRR073319	Tawny withering 2	7.115
	CRR073320	Tawny withering 3	5.057