Gene detail

Detail information of GWHGAAZE026565

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14008.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068V282\|A0A068V282_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP14008.1}
TAIR10	AT5G05570.2	8E-163	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	6591978	6610627	+
GWHAAZE00000008	mRNA	6591978	6610627	+
GWHAAZE00000008	exon	6591978	6592025	+
GWHAAZE00000008	exon	6593199	6593326	+
GWHAAZE00000008	exon	6593536	6593620	+
GWHAAZE00000008	exon	6594077	6594130	+
GWHAAZE00000008	exon	6594262	6594353	+
GWHAAZE00000008	exon	6594482	6594585	+
GWHAAZE00000008	exon	6600393	6600633	+
GWHAAZE00000008	exon	6602631	6603090	+
GWHAAZE00000008	exon	6603560	6603898	+
GWHAAZE00000008	exon	6604390	6604593	+
GWHAAZE00000008	exon	6604732	6604830	+
GWHAAZE00000008	exon	6604933	6605005	+
GWHAAZE00000008	exon	6605183	6605310	+
GWHAAZE00000008	exon	6605430	6605645	+
GWHAAZE00000008	exon	6606022	6606279	+
GWHAAZE00000008	exon	6606361	6606485	+
GWHAAZE00000008	exon	6608824	6608920	+
GWHAAZE00000008	exon	6609005	6609188	+
GWHAAZE00000008	exon	6609556	6609615	+
GWHAAZE00000008	exon	6609706	6609809	+
GWHAAZE00000008	exon	6609891	6609953	+
GWHAAZE00000008	exon	6610520	6610627	+
GWHAAZE00000008	CDS	6591978	6592025	+
GWHAAZE00000008	CDS	6593199	6593326	+
GWHAAZE00000008	CDS	6593536	6593620	+
GWHAAZE00000008	CDS	6594077	6594130	+
GWHAAZE00000008	CDS	6594262	6594353	+
GWHAAZE00000008	CDS	6594482	6594585	+
GWHAAZE00000008	CDS	6600393	6600633	+
GWHAAZE00000008	CDS	6602631	6603090	+
GWHAAZE00000008	CDS	6603560	6603898	+
GWHAAZE00000008	CDS	6604390	6604593	+
GWHAAZE00000008	CDS	6604732	6604830	+
GWHAAZE00000008	CDS	6604933	6605005	+
GWHAAZE00000008	CDS	6605183	6605310	+
GWHAAZE00000008	CDS	6605430	6605645	+
GWHAAZE00000008	CDS	6606022	6606279	+
GWHAAZE00000008	CDS	6606361	6606485	+
GWHAAZE00000008	CDS	6608824	6608920	+
GWHAAZE00000008	CDS	6609005	6609188	+
GWHAAZE00000008	CDS	6609556	6609615	+
GWHAAZE00000008	CDS	6609706	6609809	+
GWHAAZE00000008	CDS	6609891	6609953	+
GWHAAZE00000008	CDS	6610520	6610627	+

Transcript Sequence
>GWHTAAZE026599 ATGGCTATGTTCAACAAAATCCTTCAAAAGGTTACTCATTTTCATCAGAACGTGCCACACGCATGTGTCTCATTGGCAGACTTGAAACCTCGTGTTGCTGTTCATTATGGGATCCCATCTACCGCATCAGTTCTTGCTTTTGATTCTATCCAGCACCTCTTGGCTATAGGAACACAGGATGGTAAGATTAAAGTGATTGGTGGTGATAATATAGAAGGCCTTCTTATATCACCTAAGTCGTTGCCCTTTAAACACTTAGAGTTCTTCCAAAACCAAGGGTTTTTAGTCAGTGTCTCAAATGAAAATGAAGTTCAGGTTTGGGATTTAGAGCATAGGTGCATGGCTTATAAATTGCAGTGGGAGTCCAATATAACTGCTTTCTCCGTAATCTATGGCACCAACTACATGTATGTTGGAGATGAGTACGGGTTTTTGTCCGTGTTGAAGTACGATGCTGAAAAAGCCACAATCCTACCATTGGCCTATCACATTCCCGCAAACCTTATAGATGCCGTCGACTCTCCTAGGCACGTCGTCTCTCCTCTGTTCTCTCTCCGACGTCTCACAGCCTCCGTCGACGCTGCTCTGCACATCGTCTCTCCTCTCTGCCGTTCTTCGTTGCTGCTTCTCCATCTCTGTTCGTCGTCTCTCCTCTCCTTTGTTCGTCGTCTCTCTCTCCTCTGTTCGTGTCGTCTCTCTCTCCTCCCAGACGTCGTCTCTCCTCTGTTTGTGTTTCGACTCTCCATAAAAAGAGTGCTGATTGCGTATGAGAACGGGTTGATTATTCTTTGGGATGTTACTGAAGATCGGACGATCCTTGCTAGAGGCAATAAGGATCTCCAACTGAAGGATAAAATAGTAGTTCACTCTCCAAATGGTGCAAGACATGAGCATTCCAGTGACACATTCGACAATGAGCAAGTGGATAAAGAGATAAGCTCCCTTTGTTGGGTATCTTCTGACGGGTCAATCCTTGCTGTTGGTTATGTAGATGGAGATATATTGTTATGGAACCTATCAAATGCCGCCCCTACCAAAGATCAGAAAGCTCACAATTTGTCTAATAGTGTCATTAAGCTACAATTGTCGTCAGCCGATCGAAGACTTCCAGTCATTGTTTTGCATTGGTCTGCAAATAGTGCACATAATGGTCATGGGGGTCAACTCTTTGTCTATGGAGGTGATGAAATTGGATCTGAAGAAATCCTAACGATCATATCTCTGGATTGGTCATCCGGGATACAAACTTTGAAATGCGTGTACCGCGTGGACCTTACGCTGAATGGTTCTTTTGCCGATATGATTTTAATGCCAAATGCTGGTGCAGCAGAGAGCAGTACCACCTCTACCCTGTTTGTATTGACCAACCCAGGACAGTTGTACTTCTATGATGATGCTTGCTTATCTTCCTTGGCGTCTCAATCTGGTAAAAAGCATTCTGTCCACGCCGTTCAATATCCTGTGATTATACCTACAATTGAACCGTATATGACTCTGGGAAAGCTCAGTTTGATACATAAAGAAGGGAACTTTTCAAGGGCTCTCTCAGAGGCAGCTGGAAAACTTGGATTAGCACATGCTATAACTCCAACGAGTACAAACTGGCCTCTGACTGGTGGGGTTCCCAGTCAGCTGTGCTTCGCTGAAAATAAAGGAATCGAAAGGGTATATATAGGAGGCTATCGGGATGGAACTGTTCGAATATGGGATGCCACATTTCCAACTTTGTCGCTTCTATATGTTTTAGGATCCGAGATGGAAGGTATTGAAGTTGCTGGTGCAAGTGCATCAGTATCAGCGGTGGACTTTTTCTCCTCCACTTCAAGTTTAGCTATTGGCAATGAATGTGGTCAGGTTCGTCTACATAGGCTAATTCGAAGTTCTGATGAAAAGAGCTTGCATTTTGTGACAGCAACCAAAAGTGAAGTTCATAATTTGCCTCACGGAAACAAGAATCAATGCACAGCTGTGTTTTCCCTCCTCAATTCTCCTGTATGCATGCTACAGTATGTAGATAATGGAGCCAGACTTGCTGTAGGATTTGAATGTGGTGGGGTTGCTATGATTGATGTTAATTCATCTCAAGTCTTGTTTCTCTCGGAATCTGTATCCATCTCACATTCTCCGGTTATATCTCTGGATGTGAAAATATGTCCTCCTCATAATCTGGAGGACATTGTAAACAAAAATTCAAATGAATCAGTGAGGGAATTAGCTTTTATTTTGACCAAAGATGCACACATCATTCTTATTGACAGTACCACTGGCAATCTTCTTAAGAACTGTTTGTATGCAGAGGGAAACTCTTCTGTCTCTGAAGTGTCTGAACAGCATTCACTGATCTCATCTCAGGGTTCTGAAGCCAAAACTGAACCTGCAGAAATCAATTCTCCATCTGGAAGTAATTTACCGGAATCTAAAGTTGACTATCCTAGTTCAACCACGCATTTAGGGAAGACAGTGGACTCATATATTTTGCTTTGTTGTGAGGATGCGTTGCTTATATATTCACCAGTGTCTGTCATTCAGGGGAACAAAGAATTCAGCTTTAAGGTGAATCTTGTAAAACCATGTTGCTGGACTACAATTTTCCAGAGAGATGAAAAAGTATGTGGACTAATTTTAGTCTATCAGACTGGAGAAATTGAAATAAGGATTCCGGAGTCTTTGCCTTGTCTTCACGATAACGTCCTCGCAGCTGCTTCTGATGCTGCTTTTAGTGTCTCTTTAAATCAGAAGAAACAAGCTCAAAGTACTGGCCCTGGAGGATTATTTGGTGGACTCATTCAAGGACTCAAAGGGGGTAAACCAGATCTCAGTGTGGAACATAATGAAACTCGTGAAAATGTTATTGCACATTTAGAGAGCATATTTTCGAGGGTCCCATTTTCTGACCTTTCTACAAGCATTGACATTGACATGGACCTTTCAACAAATGATATTCAAATTGATGACCTTCCTTTATCATCGGTTAAGATCACGAAAGAAAGAAAAGACAAGGAAATAGAAAGGGAAAAATTATTTGAAGATGGTTCTACTGATACACAACCGAAAATGCGAACAACTGAAGAAATAAGGGCTAAATATCGAAAGACAGGGGATGCCTCTTCTGCAGCTGCACATGCGAGAGACAAACTTGTAGAGCGCAAGGAGAAACTTGAGAAACTTAGCCTTCGAACGGAGGAGCTACAAAGTGGGGCGGAGAACTTCTCGTCACTGGCAGGTGAGCTTGCCAAGCAAATGCAAAATCGTAAATGGTGGCAGCTATAA

Network for GWHGAAZE026565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.8	ANAPC4_WD40	304	378	0.00023
PF00957.22	Synaptobrevin	1044	1085	3.70E-06

Protein Sequence

>GWHPAAZE026583
MAMFNKILQKVTHFHQNVPHACVSLADLKPRVAVHYGIPSTASVLAFDSIQHLLAIGTQDGKIKVIGGDNIEGLLISPKSLPFKHLEFFQNQGFLVSVSNENEVQVWDLEHRCMAYKLQWESNITAFSVIYGTNYMYVGDEYGFLSVLKYDAEKATILPLAYHIPANLIDAVDSPRHVVSPLFSLRRLTASVDAALHIVSPLCRSSLLLLHLCSSSLLSFVRRLSLLCSCRLSLLPDVVSPLFVFRLSIKRVLIAYENGLIILWDVTEDRTILARGNKDLQLKDKIVVHSPNGARHEHSSDTFDNEQVDKEISSLCWVSSDGSILAVGYVDGDILLWNLSNAAPTKDQKAHNLSNSVIKLQLSSADRRLPVIVLHWSANSAHNGHGGQLFVYGGDEIGSEEILTIISLDWSSGIQTLKCVYRVDLTLNGSFADMILMPNAGAAESSTTSTLFVLTNPGQLYFYDDACLSSLASQSGKKHSVHAVQYPVIIPTIEPYMTLGKLSLIHKEGNFSRALSEAAGKLGLAHAITPTSTNWPLTGGVPSQLCFAENKGIERVYIGGYRDGTVRIWDATFPTLSLLYVLGSEMEGIEVAGASASVSAVDFFSSTSSLAIGNECGQVRLHRLIRSSDEKSLHFVTATKSEVHNLPHGNKNQCTAVFSLLNSPVCMLQYVDNGARLAVGFECGGVAMIDVNSSQVLFLSESVSISHSPVISLDVKICPPHNLEDIVNKNSNESVRELAFILTKDAHIILIDSTTGNLLKNCLYAEGNSSVSEVSEQHSLISSQGSEAKTEPAEINSPSGSNLPESKVDYPSSTTHLGKTVDSYILLCCEDALLIYSPVSVIQGNKEFSFKVNLVKPCCWTTIFQRDEKVCGLILVYQTGEIEIRIPESLPCLHDNVLAAASDAAFSVSLNQKKQAQSTGPGGLFGGLIQGLKGGKPDLSVEHNETRENVIAHLESIFSRVPFSDLSTSIDIDMDLSTNDIQIDDLPLSSVKITKERKDKEIEREKLFEDGSTDTQPKMRTTEEIRAKYRKTGDASSAAAHARDKLVERKEKLEKLSLRTEELQSGAENFSSLAGELAKQMQNRKWWQL

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016021	cellular_component	integral component of membrane
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.680
	SRR3591706	second leaf	12.760
	SRR3591707	mature leaf	11.497
	SRR3591708	Shoot apex	13.560
	SRR3591709	Stem	24.638
	SRR3591710	White floral bud	22.140
	SRR3591711	White flower	22.506
	SRR3591712	Green floral bud	14.885
	SRR3591713	Yellow flower	27.270
SRP173429	SRR8316895	Juvenile bud stage	8.983
	SRR8316896	Juvenile bud stage	12.857
	SRR8316897	Juvenile bud stage	5.379
	SRR8316894	Third green stage	5.759
	SRR8316900	Third green stage	15.329
	SRR8316901	Third green stage	13.143
	SRR8316898	Complete white stage	5.673
	SRR8316899	Complete white stage	14.238
	SRR8316903	Complete white stage	14.531
	SRR8316902	Silver flowering stage	6.875
	SRR8316904	Silver flowering stage	14.634
	SRR8316905	Silver flowering stage	6.687
	SRR8316906	Gold flowering stage	22.391
	SRR8316907	Gold flowering stage	19.629
	SRR8316908	Gold flowering stage	19.727
SRP132670	SRR6706286	Control	8.341
	SRR6706287	Light intensity 50%	8.600
	SRR6706288	Light intensity 20%	8.955
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.763
	CNS0095593	Slightly white alabastrum(diploid) 2	7.226
	CNS0095594	Slightly white alabastrum(diploid) 3	7.663
	CNS0095595	Whole white alabastrum(diploid) 2	6.941
	CNS0095596	Whole white alabastrum(diploid) 3	5.948
	CNS0095597	Whole white alabastrum(diploid) 4	5.740
	CNS0095598	Silvery flower (diploied) 1	11.860
	CNS0095599	Silvery flower (diploied) 2	11.340
	CNS0095600	Silvery flower (diploied) 3	18.765
	CNS0095601	Golden flower (diploid) 1	9.084
	CNS0095602	Golden flower (diploid) 2	18.026
	CNS0095603	Golden flower (diploid) 3	17.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.449
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.751
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.408
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.671
	CNS0095610	Silvery flower (tetraploid) 1	17.777
	CNS0095611	Silvery flower (tetraploid) 2	17.785
	CNS0095612	Silvery flower (tetraploid) 3	16.025
	CNS0095613	Golden flower (tetraploid) 1	12.413
	CNS0095614	Golden flower (tetraploid) 2	16.362
	CNS0095615	Golden flower (tetraploid) 3	23.959
CRA001975	CRR073297	Stem 1	9.087
	CRR073298	Stem 2	7.986
	CRR073299	Stem 3	5.266
	CRR073300	Leaf 1	9.991
	CRR073301	Leaf 2	9.548
	CRR073302	Leaf 3	7.405
	CRR073303	Juvenile bud 1	6.876
	CRR073304	Juvenile bud 2	4.556
	CRR073305	Juvenile bud 3	6.387
	CRR073306	Third green 1	4.134
	CRR073307	Third green 2	3.055
	CRR073308	Third green 3	4.565
	CRR073309	Second white 1	2.695
	CRR073310	Second white 2	5.638
	CRR073311	Second white 3	7.670
	CRR073312	Silver flowering 1	6.161
	CRR073313	Silver flowering 2	4.918
	CRR073314	Silver flowering 3	7.910
	CRR073315	Gold flowering 1	3.125
	CRR073316	Gold flowering 2	7.828
	CRR073317	Gold flowering 3	2.880
	CRR073318	Tawny withering 1	7.340
	CRR073319	Tawny withering 2	5.596
	CRR073320	Tawny withering 3	5.486