Detail information of GWHGAAZE026602


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008232068.16.95654E-16PREDICTED: E3 ubiquitin-protein ligase RNF12-like [Prunus mume]
Swissprottr|Q8LPN7|RNG1L_ARATH0.00000001E3 ubiquitin-protein ligase RING1-like
trEMBLtr|M5X4E4|M5X4E4_PRUPE1E-15Uncharacterized protein {ECO:0000313|EMBL:EMJ20927.1}
TAIR10AT3G58720.10.00000003RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene72216567222324-
GWHAAZE00000008mRNA72216567222324-
GWHAAZE00000008exon72216567222324-
GWHAAZE00000008CDS72216567222324-
Transcript Sequence

Network for GWHGAAZE026602

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21762164.40E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.466
SRR3591707mature leaf1.563
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.141
SRR3591711White flower2.443
SRR3591712Green floral bud0.000
SRR3591713Yellow flower4.151
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.078
SRR8316902Silver flowering stage0.086
SRR8316904Silver flowering stage0.357
SRR8316905Silver flowering stage0.077
SRR8316906Gold flowering stage 0.674
SRR8316907Gold flowering stage 0.105
SRR8316908Gold flowering stage 0.415
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.229
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.067
CNS0095598Silvery flower (diploied) 11.225
CNS0095599Silvery flower (diploied) 20.082
CNS0095600Silvery flower (diploied) 32.024
CNS0095601Golden flower (diploid) 10.210
CNS0095602Golden flower (diploid) 20.991
CNS0095603Golden flower (diploid) 30.739
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 13.683
CNS0095611Silvery flower (tetraploid) 23.466
CNS0095612Silvery flower (tetraploid) 30.371
CNS0095613Golden flower (tetraploid) 13.278
CNS0095614Golden flower (tetraploid) 21.769
CNS0095615Golden flower (tetraploid) 30.432
CRA001975CRR073297Stem 10.092
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.100
CRR073307Third green 20.396
CRR073308Third green 30.064
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.239
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.351
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.271
CRR073316Gold flowering 20.522
CRR073317Gold flowering 30.628
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000