Gene detail

Detail information of GWHGAAZE026605

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002276177.2	PREDICTED: adenylosuccinate lyase [Vitis vinifera]
COG	NP_438799.1	adenylosuccinate lyase
trEMBL	tr\|D7TMH4\|D7TMH4_VITVI	Adenylosuccinate lyase {ECO:0000256\|RuleBase:RU361172}
TAIR10	AT1G36280.1	L-Aspartase-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7292508	7297346	+
GWHAAZE00000008	mRNA	7292508	7297346	+
GWHAAZE00000008	exon	7292508	7292660	+
GWHAAZE00000008	exon	7293530	7293745	+
GWHAAZE00000008	exon	7293826	7294008	+
GWHAAZE00000008	exon	7294639	7294860	+
GWHAAZE00000008	exon	7295742	7295858	+
GWHAAZE00000008	exon	7295944	7296087	+
GWHAAZE00000008	exon	7296550	7296651	+
GWHAAZE00000008	exon	7296961	7297029	+
GWHAAZE00000008	exon	7297149	7297346	+
GWHAAZE00000008	CDS	7292508	7292660	+
GWHAAZE00000008	CDS	7293530	7293745	+
GWHAAZE00000008	CDS	7293826	7294008	+
GWHAAZE00000008	CDS	7294639	7294860	+
GWHAAZE00000008	CDS	7295742	7295858	+
GWHAAZE00000008	CDS	7295944	7296087	+
GWHAAZE00000008	CDS	7296550	7296651	+
GWHAAZE00000008	CDS	7296961	7297029	+
GWHAAZE00000008	CDS	7297149	7297346	+

Transcript Sequence
>GWHTAAZE026639 GTAAAGGGCATCTCTGCTGAATATTCTCAGGAATTAGAAGTCTCAAGTTTAACAGCTCTATCTCCCCTTGATGGTCGTTACCGGAGCAAAGTTAAGGACATGGCTCCTTATATGAGTGAATATGGCTTAATTTACTTTCGAGTTCTAGTTGAGATCAAGTGGTTGTTGAAGCTTTCACAAATCCCTGAAGTCATTGAGGTTCCAAGCTTCAGTACAGAAACTCAGTCTTACTTGCAAGGATTGATCGATGGATTCAGCGATAGTGATGCCTGGGAAGTTAAGAAAATCGAGAAAATTACTAACCATGATGTGAAAGCAGTGGAATACTTTTTGAAGCAGAAATGCCAATCTAATCCAGAGATAGCTAAGGTGTGTGAATTTTTTCATTTTTCCTGCACATCTGAGGACATCAACAATCTCGCCCATGCATTGATGCTGAAAGGAGCAATGGAGAATGTGATACTTCCTGTGATTGATGAATTAATTAAAGAAATATATATGATGGCTAAAGCAAATGCTCATATTCCTATGCTTTCTCGCACTCATGGGCAGCCAGCTTCTCCTACAACCTTGGGAAAGGAATTGGCAATTTTCGTTGACAGGTTAAGCAGAGAGGAACGAGATATTTCTCAAGTTGAGATAATGGGAAAGTTTGCTGGTGCAGTTGGAAACTACAATGCTCATCTAGTTGCATATCCTGATATTCAATGGCCGCAAATTGCTGAGGAGTTTGTAACATCTCTTGGTTTAAGTTTCAATCGCTATGTAACTCAGATTGAACCGCATGATTACATGGCCAAACTTTTCCATTCATTTGTCCGGTTTAACAACATCTTAATTGATTTTGATAGAGACATATGGGGCTATATCTCCTATGGTTACTTTAAGCAGATAACTAAGGCTGGTGAGATTGGATCTTCAACAATGCCTCACAAAGTCAACCCCATTGACTTTGAAAATAGTGAAGGCAATCTAGGTATAGCTAATGCAGTGCTGTCCCATTTAAGTGTGAAGTTGCCTATTTCTCGTTTCCAGCGGGATCTAACTGATTCAACGGTTCTAAGAAACATTGGTGTAGGATTTGGACATTCTCTTCTTGCTTACAAAAGCGCTATACAGGGAATAAAGAAGCTACAGGTGAATGAAGCTACCTTGGCCAAGGACCTGGACCAAGCATGGGAGGTGCTTGCTGAACCTATACAAACTGTGATGAGGAGATACGGTGTGCCGGAGCCTTATGAGAAACTAAAGGAGCTAACAAGAGGAAGAGGAGTTACAAAAGAGAGCATAAGAGAGTTTATTGAAAGACTGGAAATACCTGCAGAAGCAAAGACAAACCTCTTGAAGTTAACACCCCATTCCTATATTGGAGCTGCAGTTGATTTGGCTAGGAATGTAAGATAG

Network for GWHGAAZE026605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00206.21	Lyase_1	25	323	3.00E-56
PF08328.12	ASL_C	342	456	1.10E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01756	purB, ADSL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0009152	biological_process	purine ribonucleotide biosynthetic process
GO:0006188	biological_process	IMP biosynthetic process
GO:0004018	molecular_function	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.815
	SRR3591706	second leaf	17.906
	SRR3591707	mature leaf	13.802
	SRR3591708	Shoot apex	31.101
	SRR3591709	Stem	13.149
	SRR3591710	White floral bud	14.047
	SRR3591711	White flower	22.699
	SRR3591712	Green floral bud	29.686
	SRR3591713	Yellow flower	21.518
SRP173429	SRR8316895	Juvenile bud stage	16.572
	SRR8316896	Juvenile bud stage	29.102
	SRR8316897	Juvenile bud stage	16.945
	SRR8316894	Third green stage	10.255
	SRR8316900	Third green stage	33.418
	SRR8316901	Third green stage	24.770
	SRR8316898	Complete white stage	5.192
	SRR8316899	Complete white stage	22.193
	SRR8316903	Complete white stage	8.272
	SRR8316902	Silver flowering stage	6.124
	SRR8316904	Silver flowering stage	9.103
	SRR8316905	Silver flowering stage	4.103
	SRR8316906	Gold flowering stage	13.404
	SRR8316907	Gold flowering stage	10.951
	SRR8316908	Gold flowering stage	21.780
SRP132670	SRR6706286	Control	10.872
	SRR6706287	Light intensity 50%	13.669
	SRR6706288	Light intensity 20%	14.739
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.858
	CNS0095593	Slightly white alabastrum(diploid) 2	23.554
	CNS0095594	Slightly white alabastrum(diploid) 3	21.426
	CNS0095595	Whole white alabastrum(diploid) 2	17.860
	CNS0095596	Whole white alabastrum(diploid) 3	19.879
	CNS0095597	Whole white alabastrum(diploid) 4	13.266
	CNS0095598	Silvery flower (diploied) 1	10.694
	CNS0095599	Silvery flower (diploied) 2	14.699
	CNS0095600	Silvery flower (diploied) 3	13.659
	CNS0095601	Golden flower (diploid) 1	8.730
	CNS0095602	Golden flower (diploid) 2	9.738
	CNS0095603	Golden flower (diploid) 3	10.349
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.930
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.426
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.628
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.851
	CNS0095610	Silvery flower (tetraploid) 1	14.320
	CNS0095611	Silvery flower (tetraploid) 2	15.562
	CNS0095612	Silvery flower (tetraploid) 3	9.178
	CNS0095613	Golden flower (tetraploid) 1	10.622
	CNS0095614	Golden flower (tetraploid) 2	13.841
	CNS0095615	Golden flower (tetraploid) 3	5.356
CRA001975	CRR073297	Stem 1	12.526
	CRR073298	Stem 2	11.716
	CRR073299	Stem 3	9.548
	CRR073300	Leaf 1	11.591
	CRR073301	Leaf 2	11.415
	CRR073302	Leaf 3	11.513
	CRR073303	Juvenile bud 1	12.834
	CRR073304	Juvenile bud 2	8.637
	CRR073305	Juvenile bud 3	8.931
	CRR073306	Third green 1	0.938
	CRR073307	Third green 2	1.176
	CRR073308	Third green 3	1.207
	CRR073309	Second white 1	2.171
	CRR073310	Second white 2	2.186
	CRR073311	Second white 3	2.059
	CRR073312	Silver flowering 1	2.879
	CRR073313	Silver flowering 2	1.881
	CRR073314	Silver flowering 3	1.604
	CRR073315	Gold flowering 1	9.854
	CRR073316	Gold flowering 2	16.355
	CRR073317	Gold flowering 3	6.030
	CRR073318	Tawny withering 1	11.636
	CRR073319	Tawny withering 2	11.332
	CRR073320	Tawny withering 3	10.470