Detail information of GWHGAAZE026624


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP00150.10unnamed protein product [Coffea canephora]
Swissprottr|Q0WSN2|DAR2_ARATH0Protein DA1-related 2
trEMBLtr|A0A068TV41|A0A068TV41_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDP00150.1}
TAIR10AT2G39830.10DA1-related protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene76464667652586-
GWHAAZE00000008mRNA76464667652586-
GWHAAZE00000008exon76524817652586-
GWHAAZE00000008exon76521187652275-
GWHAAZE00000008exon76509617651048-
GWHAAZE00000008exon76507557650869-
GWHAAZE00000008exon76500037650123-
GWHAAZE00000008exon76490097649128-
GWHAAZE00000008exon76484577648669-
GWHAAZE00000008exon76483127648374-
GWHAAZE00000008exon76481047648219-
GWHAAZE00000008exon76471877647299-
GWHAAZE00000008exon76464667646797-
GWHAAZE00000008five_prime_UTR76525277652586-
GWHAAZE00000008CDS76524817652526-
GWHAAZE00000008CDS76521187652275-
GWHAAZE00000008CDS76509617651048-
GWHAAZE00000008CDS76507557650869-
GWHAAZE00000008CDS76500037650123-
GWHAAZE00000008CDS76490097649128-
GWHAAZE00000008CDS76484577648669-
GWHAAZE00000008CDS76483127648374-
GWHAAZE00000008CDS76481047648219-
GWHAAZE00000008CDS76471877647299-
GWHAAZE00000008CDS76464667646797-
Transcript Sequence

Network for GWHGAAZE026624

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM1381781.20E-06
PF12315.9DA1-like2593494.40E-39
PF12315.9DA1-like3654873.60E-54
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.659
SRR3591706second leaf6.505
SRR3591707mature leaf8.627
SRR3591708Shoot apex6.214
SRR3591709Stem13.753
SRR3591710White floral bud31.781
SRR3591711White flower24.548
SRR3591712Green floral bud16.074
SRR3591713Yellow flower10.036
SRP173429 SRR8316895Juvenile bud stage 2.682
SRR8316896Juvenile bud stage 4.815
SRR8316897Juvenile bud stage 1.639
SRR8316894Third green stage 3.398
SRR8316900Third green stage 10.364
SRR8316901Third green stage 9.774
SRR8316898Complete white stage 6.644
SRR8316899Complete white stage 14.160
SRR8316903Complete white stage 16.100
SRR8316902Silver flowering stage6.916
SRR8316904Silver flowering stage7.531
SRR8316905Silver flowering stage4.228
SRR8316906Gold flowering stage 7.254
SRR8316907Gold flowering stage 6.538
SRR8316908Gold flowering stage 6.245
SRP132670SRR6706286Control9.000
SRR6706287Light intensity 50%8.875
SRR6706288Light intensity 20%8.807
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.886
CNS0095593Slightly white alabastrum(diploid) 219.029
CNS0095594Slightly white alabastrum(diploid) 311.192
CNS0095595Whole white alabastrum(diploid) 210.293
CNS0095596Whole white alabastrum(diploid) 37.325
CNS0095597Whole white alabastrum(diploid) 48.981
CNS0095598Silvery flower (diploied) 18.361
CNS0095599Silvery flower (diploied) 28.758
CNS0095600Silvery flower (diploied) 37.442
CNS0095601Golden flower (diploid) 14.239
CNS0095602Golden flower (diploid) 23.687
CNS0095603Golden flower (diploid) 33.102
CNS0095604Slightly white alabastrum(tetraploid) 18.444
CNS0095605Slightly white alabastrum(tetraploid) 211.867
CNS0095606Slightly white alabastrum(tetraploid) 310.777
CNS0095607Whole white alabastrum(tetraploid) 112.647
CNS0095608Whole white alabastrum(tetraploid) 27.640
CNS0095609Whole white alabastrum(tetraploid) 35.161
CNS0095610Silvery flower (tetraploid) 16.592
CNS0095611Silvery flower (tetraploid) 22.801
CNS0095612Silvery flower (tetraploid) 36.347
CNS0095613Golden flower (tetraploid) 13.836
CNS0095614Golden flower (tetraploid) 24.325
CNS0095615Golden flower (tetraploid) 32.480
CRA001975CRR073297Stem 15.805
CRR073298Stem 27.620
CRR073299Stem 33.105
CRR073300Leaf 19.728
CRR073301Leaf 211.607
CRR073302Leaf 35.199
CRR073303Juvenile bud 111.337
CRR073304Juvenile bud 24.543
CRR073305Juvenile bud 312.260
CRR073306Third green 14.507
CRR073307Third green 25.681
CRR073308Third green 35.965
CRR073309Second white 11.784
CRR073310Second white 22.560
CRR073311Second white 31.144
CRR073312Silver flowering 11.351
CRR073313Silver flowering 20.345
CRR073314Silver flowering 31.146
CRR073315Gold flowering 11.663
CRR073316Gold flowering 22.284
CRR073317Gold flowering 31.968
CRR073318Tawny withering 14.870
CRR073319Tawny withering 213.167
CRR073320Tawny withering 36.311