Gene detail

Detail information of GWHGAAZE026626

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00148.1	0	unnamed protein product [Coffea canephora]
COG	YP_003340218.1	1E-17	hypothetical protein
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	0.00000002	Protein Mut11
trEMBL	tr\|A0A068TXS7\|A0A068TXS7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00148.1}
TAIR10	AT5G05970.2	8E-172	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7674519	7680969	+
GWHAAZE00000008	mRNA	7674519	7680969	+
GWHAAZE00000008	exon	7674519	7674918	+
GWHAAZE00000008	exon	7675735	7675847	+
GWHAAZE00000008	exon	7676417	7676677	+
GWHAAZE00000008	exon	7676809	7676913	+
GWHAAZE00000008	exon	7677583	7677648	+
GWHAAZE00000008	exon	7677839	7678127	+
GWHAAZE00000008	exon	7678591	7678628	+
GWHAAZE00000008	exon	7678760	7679323	+
GWHAAZE00000008	exon	7680111	7680213	+
GWHAAZE00000008	exon	7680908	7680969	+
GWHAAZE00000008	five_prime_UTR	7674519	7674758	+
GWHAAZE00000008	CDS	7674759	7674918	+
GWHAAZE00000008	CDS	7675735	7675847	+
GWHAAZE00000008	CDS	7676417	7676677	+
GWHAAZE00000008	CDS	7676809	7676913	+
GWHAAZE00000008	CDS	7677583	7677648	+
GWHAAZE00000008	CDS	7677839	7678127	+
GWHAAZE00000008	CDS	7678591	7678628	+
GWHAAZE00000008	CDS	7678760	7679323	+
GWHAAZE00000008	CDS	7680111	7680213	+
GWHAAZE00000008	CDS	7680908	7680969	+

Transcript Sequence
>GWHTAAZE026660 TGAATTTCTCTCTCACGCACTTTCTCTCTCCGGTAGGGTTTCATTCAAAACACAGTAATGATCGACTACACTACACCAACCCTCCATTTTCAATTATTCTCTTTACACTCTTCGCTTCAACATTCCTAATTCAAATCACACTCTACTTGGTTACTTTCAATCAATGTTACCTCGAATTCTCGATCCCCAGACTCTCCGTAACTAAAATTCCTTCACTCTCCGAGTTGCATTTGAGGTTTGATGAATTTCTCAGATCCGTCAATGGCGTTATTGGCCGCGACCGGTGGCGACACCGTGAAGCTCTTTGACGTATCTGACGACGCCGCCGGCGATCCCTGCACTCTAAGCTACACTCCTTCCCCCGGTTTCCAAGTCAACTCCGTCAAATGGAACCATACCAATTTAGTTGTGGCAAGTGCCGGAGACGATAAGAAGATATCGTTGTGGCGTAAAAATGGGCAGAGCCTGGGGACTATTCCGGTGGCCGGCAGTGATATCAGCGACAACATCGAGGAGTCTATATCAACTATCAGCTTTAGCAACAAAGGATCCAGATACATTTGTACTGGGGGAAGTGGTCAAGTTGTAAGAATATGGGACTTGCAGAGGAAACGCTGTATCAAGTGGTTGAGAGGTCATACTGATACAATAACGGGTGCAATGTACAATTGTAAAGACGAACACTTAGCTTCCATCAGTCTCAGTGGGGATCTTATTCTTCACAACCTTGCTTCCGGTGGAAGGGCAACAGAACTGAAGGATCCTAATAAGCAGGTTTTGAGAGTGCTTGATTATTCTCGAGTTAGCAGGCACCTTTTGGTGACAGCTGGTGATGATGGGTCTGTTCATCTTTGGGATACAACTGGACGCAGCCCAAAGGTTTCTTGGCTGAAGCAGCATTCTGCACCAACTGCTGGTATTAGTTTCTCACCATCAAATGATAAGGTAATTGCTAGTGTTGGTCTGGATAAAAAGTTATACACTTTTGACTCGGGGACTAGGAGGCCTTCGCATTGCATTCCTTATGAAGCACCTTTCTCTTCATTGGCATTCAGAGATGATGGATACATATTGGCAGCCGGAACGAGTGGTGGCCGGGTAGTTTTCTATGATGTTCGTGGAAAGCCACAGCCTTTCACTGTTCTTCGTGCCTATGGAAATTCTGAGGTGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTTCCCTCCCTTCCTCCAATTGTAGTGATGGTTTCTTTTTGTTCAGTTTGCCTGTGGCCGTTGCCAGTCTTTGCTGGCAAAGATCGAAACCTGTGATTGTAAATGAAAGCAATTGCACAGCCGATACTGCTCTTCTGGGAGGCGCTGTGGAGGATTCGATCCTTATGCCAGACCCACTTCCTTCTGCGCCATCATCTAGCCTCTCGACATCCACAACAGCCTCAGGTTCTCTAAATCCTGGCCGTTCATCACCCTATGCAGAGTCGTTCTCCTTCGGACCAGCCAGTACTGGATCTCTGTCAAGCTCTCTAAGTTTACCCACAGGAGAGGAGACACCAATTCGAAGTAGCTTATGGACTGGTGGAACTTTGTCTAGGTTACATGCACCTCGAGCTTATAATATGAAGGATGATATGGAAGTGTTTTCCCCACTTGTGGAAGTTCAGCCAATAACACCCTCACTTGATAAGCTGTGGGATGAGATCGGTGCAACAAAGAAAGATCACGAGAAGATGCCTTCATTGCTCTTCCCTTCATCTAGAACATTCTCTCTTCCAGAAGAAGGGAGCAAAGATACTCATCCAATATTTGACTGGAAACCTACTTCATCTTCGAAGCAGGATGACACCCACTCTTCATCTTCCAAGAGCGAAGATTCTTCCTCCATAACTCCTCCAGAAGCTTGGGGTGGTGGGAGATTGTCCGACAAATTCACTCTCAATCATGAAGGTTGTGCAAGGGTCCCACCTCATGGTGAAGGTGCATTTGATGACAAATCATTCTAG

Network for GWHGAAZE026626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	43	69	0.029

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.435
	SRR3591706	second leaf	7.105
	SRR3591707	mature leaf	4.045
	SRR3591708	Shoot apex	18.417
	SRR3591709	Stem	11.055
	SRR3591710	White floral bud	5.850
	SRR3591711	White flower	8.031
	SRR3591712	Green floral bud	8.252
	SRR3591713	Yellow flower	4.264
SRP173429	SRR8316895	Juvenile bud stage	6.864
	SRR8316896	Juvenile bud stage	8.464
	SRR8316897	Juvenile bud stage	4.715
	SRR8316894	Third green stage	3.612
	SRR8316900	Third green stage	8.601
	SRR8316901	Third green stage	8.207
	SRR8316898	Complete white stage	1.476
	SRR8316899	Complete white stage	9.248
	SRR8316903	Complete white stage	4.079
	SRR8316902	Silver flowering stage	1.498
	SRR8316904	Silver flowering stage	2.026
	SRR8316905	Silver flowering stage	0.933
	SRR8316906	Gold flowering stage	3.394
	SRR8316907	Gold flowering stage	3.355
	SRR8316908	Gold flowering stage	3.987
SRP132670	SRR6706286	Control	11.161
	SRR6706287	Light intensity 50%	10.235
	SRR6706288	Light intensity 20%	11.555
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.926
	CNS0095593	Slightly white alabastrum(diploid) 2	4.016
	CNS0095594	Slightly white alabastrum(diploid) 3	3.018
	CNS0095595	Whole white alabastrum(diploid) 2	3.144
	CNS0095596	Whole white alabastrum(diploid) 3	2.425
	CNS0095597	Whole white alabastrum(diploid) 4	2.418
	CNS0095598	Silvery flower (diploied) 1	5.876
	CNS0095599	Silvery flower (diploied) 2	4.599
	CNS0095600	Silvery flower (diploied) 3	5.838
	CNS0095601	Golden flower (diploid) 1	4.231
	CNS0095602	Golden flower (diploid) 2	6.646
	CNS0095603	Golden flower (diploid) 3	7.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.483
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.321
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.410
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.528
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.404
	CNS0095610	Silvery flower (tetraploid) 1	6.315
	CNS0095611	Silvery flower (tetraploid) 2	7.097
	CNS0095612	Silvery flower (tetraploid) 3	4.086
	CNS0095613	Golden flower (tetraploid) 1	1.614
	CNS0095614	Golden flower (tetraploid) 2	4.807
	CNS0095615	Golden flower (tetraploid) 3	1.717
CRA001975	CRR073297	Stem 1	13.489
	CRR073298	Stem 2	12.667
	CRR073299	Stem 3	13.478
	CRR073300	Leaf 1	11.645
	CRR073301	Leaf 2	9.790
	CRR073302	Leaf 3	9.243
	CRR073303	Juvenile bud 1	7.654
	CRR073304	Juvenile bud 2	7.028
	CRR073305	Juvenile bud 3	11.529
	CRR073306	Third green 1	0.513
	CRR073307	Third green 2	0.947
	CRR073308	Third green 3	0.994
	CRR073309	Second white 1	0.583
	CRR073310	Second white 2	0.701
	CRR073311	Second white 3	1.349
	CRR073312	Silver flowering 1	1.051
	CRR073313	Silver flowering 2	1.264
	CRR073314	Silver flowering 3	0.528
	CRR073315	Gold flowering 1	4.400
	CRR073316	Gold flowering 2	6.151
	CRR073317	Gold flowering 3	5.485
	CRR073318	Tawny withering 1	11.693
	CRR073319	Tawny withering 2	5.006
	CRR073320	Tawny withering 3	11.016