Gene detail

Detail information of GWHGAAZE026627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008233505.1	0	PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Prunus mume]
COG	YP_002494545.1	1E-25	amino acid/peptide transporter
Swissprot	tr\|Q9M331\|PTR45_ARATH	0	Protein NRT1/ PTR FAMILY 5.7
trEMBL	tr\|M5X851\|M5X851_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22129.1}
TAIR10	AT3G53960.1	0	Major facilitator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7682679	7687823	-
GWHAAZE00000008	mRNA	7682679	7687823	-
GWHAAZE00000008	exon	7687658	7687823	-
GWHAAZE00000008	exon	7684725	7684942	-
GWHAAZE00000008	exon	7683825	7684369	-
GWHAAZE00000008	exon	7682679	7683525	-
GWHAAZE00000008	CDS	7687658	7687823	-
GWHAAZE00000008	CDS	7684725	7684942	-
GWHAAZE00000008	CDS	7683825	7684369	-
GWHAAZE00000008	CDS	7682679	7683525	-

Transcript Sequence
>GWHTAAZE026661 ATGGAAAAGAGAAATGGATTAATAATAAGAGATGGTGAAGAGTGTGATAGAAATAAAGATAATGGTGATAAGGAGAAGTGGGTGTTTGATTCGTCTTTTGATCATCAAGGAAGAGTTCCTCTCCGAGCATCAACCGGCGTCTGGAAAGCAGCTCTCTTCATTATAACTATTGAGTTTAGTGAGAGACTAAGCTACTTTGGTATATCATCAAACCTAATAACATATATGACGAAAGTGATGCATCAAGACCTCAAAACAGCAGCAAAGATTGTCAACTGTTGGGGAGGAGTAACCACCGTCATGCCCCTACTTGGAGGGTTTCTTGCAGATGCCTACACTGGTCGTTTCTTCATGATCTTGCTTTCCTCCCTCATCTATCTCATGGGTTTATCTATCTTGATAATGTCCCAATTTGTCCCAACCCTAAAGCCATGCAAGCTCAAACCATGCACCCACACTAGCAAAGCACATGAAGTTGCTTTCTTCCTCGCAATTTACTGCATCTCATTGGGAACTGGAGGCCACAAGCCATGCCTAGAAAGCTTCGGGGCAGATCAATTCGACGATGACCACCCCCAAGAGAGGAGGAAGAAAATGTCGTATTTCAATTGGTGGAACTTTGCTCTTTGTTGTGGGCTATTCCTTGGTGTAACATTGATTGTCTATTTGCAAGATAATGTGGGCTGGGGTGTTGGATACCTTACACTTGCTATAACTATGACTATAAGCATTATGGTGTTCTATATTGGGAAGCCATTTTATAGGCGTAGGGTGGCTAAGGGTAGCCCATTAACACCCATGATACAAGTGGTAGTTGCAGCTATAAAGAAGAGGAATTTGGCTTATCCTTCTAGTGACGATTTGTTGTATGAAGTTCCAAAGGGAATGGGGAATCAAGAAAGGTTGCTTAATCATACAAGAAAATTCAGATTTCTTGACAAAGCTGCAATAATAGAAGCCAACAAAGGTTCATTATCGAATGAGAAGAAACAAACTCCATGGTCACTATCAACAGTGACCAAAGTGGAAGAAACAAAACTAATACTAAACATGATACCCATATGGTTAACATGCTTACCCTTCGGAATCTGCATGGCCCAATCCTCAACATTCTTCGTCAAACAGAGCGTCGCAATGAACCGAAACATCACCTCAACTTTCGAGATCCCGCCCGCCAGCGTTTCCGCTGTAGGTGCCCTTGGGATGCTACTCACCATCACGATCTACGAGAAAATCCTAGTCCCGATCCTACGAAGAGGCACAGGCAACGAGAGAGGCATCAACATCCTCAAGCGAATCGGCATTGGAATGGTGTTTTCGGCTCTAGCGATGTCAATTGCAGCGATTGTGGAGAAAATGAGGCTAACTAGGGTTGAAACCGAGGCTAGACCAATGAGTGCATTATGGTTAACACCACAATATGGGGTTTTAGGGATCGCAGATTCATTCACACTTGTGGGGTTACAAGAGTACTTTTATGATCAAGTGCCGGATTCAATGAGAAGTTTAGGGATTGCATTTTTTCTGAGTGTGATTGGTGTTGGGAGTTTCTTGAGTGGTGGTTTTATAAGCATCGTGGATCGGATTACGGAGAAGACAGGAAGGGGTTGGATTGGGAAGGAATTGAGTGAGAGTCGTTTGGATAAGTTCTATTGGTTGTTGGCGGCCATGAGTGGATTGAATTTGTGTGTTTATATTTTCATGGCGAAGAGATATACTTACAAGAATGTGCATAGAAGTGTTGAGGTAGGTGATCAGGTTGAAATGGTGGCATGA

Network for GWHGAAZE026627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0023

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00854.22	PTR2	118	537	1.70E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.855
	SRR3591706	second leaf	0.075
	SRR3591707	mature leaf	0.610
	SRR3591708	Shoot apex	0.236
	SRR3591709	Stem	14.356
	SRR3591710	White floral bud	6.329
	SRR3591711	White flower	1.195
	SRR3591712	Green floral bud	14.146
	SRR3591713	Yellow flower	0.339
SRP173429	SRR8316895	Juvenile bud stage	0.822
	SRR8316896	Juvenile bud stage	7.652
	SRR8316897	Juvenile bud stage	2.003
	SRR8316894	Third green stage	3.464
	SRR8316900	Third green stage	11.867
	SRR8316901	Third green stage	7.688
	SRR8316898	Complete white stage	1.262
	SRR8316899	Complete white stage	2.977
	SRR8316903	Complete white stage	2.829
	SRR8316902	Silver flowering stage	0.888
	SRR8316904	Silver flowering stage	1.083
	SRR8316905	Silver flowering stage	0.475
	SRR8316906	Gold flowering stage	0.773
	SRR8316907	Gold flowering stage	1.531
	SRR8316908	Gold flowering stage	0.233
SRP132670	SRR6706286	Control	14.465
	SRR6706287	Light intensity 50%	15.066
	SRR6706288	Light intensity 20%	17.741
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.118
	CNS0095593	Slightly white alabastrum(diploid) 2	4.389
	CNS0095594	Slightly white alabastrum(diploid) 3	7.322
	CNS0095595	Whole white alabastrum(diploid) 2	3.288
	CNS0095596	Whole white alabastrum(diploid) 3	4.209
	CNS0095597	Whole white alabastrum(diploid) 4	7.503
	CNS0095598	Silvery flower (diploied) 1	1.021
	CNS0095599	Silvery flower (diploied) 2	1.858
	CNS0095600	Silvery flower (diploied) 3	2.205
	CNS0095601	Golden flower (diploid) 1	0.270
	CNS0095602	Golden flower (diploid) 2	0.424
	CNS0095603	Golden flower (diploid) 3	0.303
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.728
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.606
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.807
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.395
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.027
	CNS0095610	Silvery flower (tetraploid) 1	0.703
	CNS0095611	Silvery flower (tetraploid) 2	0.689
	CNS0095612	Silvery flower (tetraploid) 3	0.397
	CNS0095613	Golden flower (tetraploid) 1	0.062
	CNS0095614	Golden flower (tetraploid) 2	0.556
	CNS0095615	Golden flower (tetraploid) 3	0.147
CRA001975	CRR073297	Stem 1	3.192
	CRR073298	Stem 2	6.900
	CRR073299	Stem 3	4.084
	CRR073300	Leaf 1	3.048
	CRR073301	Leaf 2	3.461
	CRR073302	Leaf 3	4.076
	CRR073303	Juvenile bud 1	1.252
	CRR073304	Juvenile bud 2	1.044
	CRR073305	Juvenile bud 3	2.307
	CRR073306	Third green 1	0.610
	CRR073307	Third green 2	1.543
	CRR073308	Third green 3	1.097
	CRR073309	Second white 1	0.759
	CRR073310	Second white 2	1.100
	CRR073311	Second white 3	0.668
	CRR073312	Silver flowering 1	0.355
	CRR073313	Silver flowering 2	0.243
	CRR073314	Silver flowering 3	0.323
	CRR073315	Gold flowering 1	0.052
	CRR073316	Gold flowering 2	0.103
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.943
	CRR073319	Tawny withering 2	4.125
	CRR073320	Tawny withering 3	1.771