Gene detail

Detail information of GWHGAAZE026631

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009774452.1	0	PREDICTED: folylpolyglutamate synthase isoform X2 [Nicotiana sylvestris]
COG	YP_002523537.1	1E-28	folylpolyglutamate synthase (folylpoly-gamma-glutamatesynthetase)
Swissprot	tr\|F4K2A1\|FPGS1_ARATH	2E-167	Folylpolyglutamate synthase {ECO:0000250\|UniProtKB:Q05932, ECO:0000312\|EMBL:CAC80839.2}
trEMBL	tr\|B9SE17\|B9SE17_RICCO	0	Folylpolyglutamate synthase {ECO:0000256\|PIRNR:PIRNR038895}
TAIR10	AT5G05980.2	3E-132	DHFS-FPGS homolog B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7760277	7768197	-
GWHAAZE00000008	mRNA	7760277	7768197	-
GWHAAZE00000008	exon	7760277	7760366	-
GWHAAZE00000008	exon	7760526	7760686	-
GWHAAZE00000008	exon	7761158	7761310	-
GWHAAZE00000008	exon	7762060	7762138	-
GWHAAZE00000008	exon	7762600	7762875	-
GWHAAZE00000008	exon	7763695	7763859	-
GWHAAZE00000008	exon	7764009	7764086	-
GWHAAZE00000008	exon	7764528	7764574	-
GWHAAZE00000008	exon	7765003	7765063	-
GWHAAZE00000008	exon	7765239	7765295	-
GWHAAZE00000008	exon	7765727	7765810	-
GWHAAZE00000008	exon	7767680	7767745	-
GWHAAZE00000008	exon	7768027	7768197	-
GWHAAZE00000008	CDS	7768027	7768197	-
GWHAAZE00000008	CDS	7767680	7767745	-
GWHAAZE00000008	CDS	7765727	7765810	-
GWHAAZE00000008	CDS	7765239	7765295	-
GWHAAZE00000008	CDS	7765003	7765063	-
GWHAAZE00000008	CDS	7764528	7764574	-
GWHAAZE00000008	CDS	7764009	7764086	-
GWHAAZE00000008	CDS	7763695	7763859	-
GWHAAZE00000008	CDS	7762600	7762875	-
GWHAAZE00000008	CDS	7762060	7762138	-
GWHAAZE00000008	CDS	7761158	7761310	-
GWHAAZE00000008	CDS	7760526	7760686	-
GWHAAZE00000008	CDS	7760277	7760366	-

Transcript Sequence
>GWHTAAZE026665 ATGAGGAGCATATCGTGTACTATATTTGATTGGATTATTGATGCTGAAGGTGGCAATGGATCACCATACGAGGAGGCAATGGATGCTTTGTCATCTCTGATAACCAAACGTAGTCGTGCTGATAAGAGCAACAAGGGTGATCGATATGAATTGTTGTTTGATTACCTCAAGATTCTGGACTTGGAAGAGCCAATTTCACAAATGAAAGTTATCCATGTGGCAGGCACCAAAGGAAAGGAAAAAGCCAGTGATGATATACCGATGCCCACTTACTTTCGCTTTCTCGCATTACTTGCCTTCAAGATATTTGAATTAGAGCAGGTAGATGTTGCTATTTTGGAGGTTGGCTTAGGTGGAAAATATGATGCAACGAATGTGGTTGAAAAGCCAATTGTGTGTGGTATATCTTCCTTGGGGTACGATCATATGGAAATTCTTGGAAATACTCTTGGAGCTATTGCTGGGGAGAAGGCTGGTATCTTCAAGAAAGGAGTTCCAGCATTTACTGTGCCTCAACCAGAGGAAGCTATGCACGTGCTTGAAGAGAAGGCTTCTATGTTGGATATACCTCTTACAGTAGCAACCCCATTGGACTCTAATTTGCTGAAGGGTCTACATCTTGGGCTTCATGGTGATCATCAATATCTGAATGCTGGTCTTGCTATTTCTTTATGCTCTACTTGGCTTCAAAAGACTGGCCATCTTGAATTCAATTACCTGGAACAGACTAGTGTTCTGCCTGAGCAGTTTATCGAAGGGCTTACAACAGCTACACTTCAAGGAAGGGCTCAGATCGTCCCCGATCAGTTCATAGATAGTGAAAATCCAGGAGATTTGGTGTTCTATTTGGATGGGGCCCATAGTCCTGAAAGTATGGAAGCATGTGGAAAATGGTTTTCTCTTGCCATCAAGGAAGATCCCAAGCAGCAGCTCAAATCCTATAATGATCAAGCACTTGATAATTCCAGAGCCTCATATGAATCCCCACATAAGAATTCCACACAGATATTGTTATTCAATTGTATGTCAGTGAGAGACCCACAATTGCTCCTTCCACGCCTTATGCACACATGCGCTAGTCATGGAGTCCACTTCAAGAAAGCACTGTTTGTACCAAATGTATCGGTCTATTACAAAGTTGGATCCACTGCTTTACCATCGTCAGATCCTCAAGTTGACCTTTCCTGGCAGTTGACTCTTCAAAAATTATGGGAGAGCATGATTCACGGTGAAAAAGGGGATGCCAAAAGTACTGAAGTTACTTCAGATGAAGGTAGTAATAGTGATGCTGAAAAGCAAGTTAAGAACTGTGAGAACAGTGCGGTGTTTTCATCACTTCCGTTAGCTATTAACTGGTTGAGGGACAATGTTCAACACAATCAGTCTGTTCGTTATCAGGTTCAGATTATTGTTGATGTGAAACCCGGATGTGGATTACTATTTTCAAGATCCATTATTCGACCAAAATATGACTCAGCTATGATCTGA

Network for GWHGAAZE026631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01930	FPGS	Metabolic pathways	map01100
K01930	FPGS	Folate biosynthesis	map00790

Gene Ontology

GO term	Ontology	Name
GO:0009396	biological_process	folic acid-containing compound biosynthetic process
GO:0009058	biological_process	biosynthetic process
GO:0004326	molecular_function	tetrahydrofolylpolyglutamate synthase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.222
	SRR3591706	second leaf	31.201
	SRR3591707	mature leaf	25.500
	SRR3591708	Shoot apex	19.561
	SRR3591709	Stem	25.973
	SRR3591710	White floral bud	29.038
	SRR3591711	White flower	26.865
	SRR3591712	Green floral bud	29.928
	SRR3591713	Yellow flower	25.026
SRP173429	SRR8316895	Juvenile bud stage	18.483
	SRR8316896	Juvenile bud stage	30.540
	SRR8316897	Juvenile bud stage	14.513
	SRR8316894	Third green stage	11.227
	SRR8316900	Third green stage	29.876
	SRR8316901	Third green stage	29.337
	SRR8316898	Complete white stage	9.747
	SRR8316899	Complete white stage	27.275
	SRR8316903	Complete white stage	16.768
	SRR8316902	Silver flowering stage	9.497
	SRR8316904	Silver flowering stage	14.776
	SRR8316905	Silver flowering stage	6.553
	SRR8316906	Gold flowering stage	19.693
	SRR8316907	Gold flowering stage	19.911
	SRR8316908	Gold flowering stage	21.221
SRP132670	SRR6706286	Control	10.401
	SRR6706287	Light intensity 50%	11.638
	SRR6706288	Light intensity 20%	12.710
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.333
	CNS0095593	Slightly white alabastrum(diploid) 2	18.363
	CNS0095594	Slightly white alabastrum(diploid) 3	17.736
	CNS0095595	Whole white alabastrum(diploid) 2	14.633
	CNS0095596	Whole white alabastrum(diploid) 3	13.016
	CNS0095597	Whole white alabastrum(diploid) 4	13.306
	CNS0095598	Silvery flower (diploied) 1	16.378
	CNS0095599	Silvery flower (diploied) 2	12.914
	CNS0095600	Silvery flower (diploied) 3	20.639
	CNS0095601	Golden flower (diploid) 1	8.637
	CNS0095602	Golden flower (diploid) 2	15.658
	CNS0095603	Golden flower (diploid) 3	14.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.923
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.755
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.129
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.471
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.669
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.494
	CNS0095610	Silvery flower (tetraploid) 1	26.529
	CNS0095611	Silvery flower (tetraploid) 2	25.174
	CNS0095612	Silvery flower (tetraploid) 3	23.911
	CNS0095613	Golden flower (tetraploid) 1	13.625
	CNS0095614	Golden flower (tetraploid) 2	19.340
	CNS0095615	Golden flower (tetraploid) 3	13.382
CRA001975	CRR073297	Stem 1	26.133
	CRR073298	Stem 2	23.488
	CRR073299	Stem 3	23.733
	CRR073300	Leaf 1	24.343
	CRR073301	Leaf 2	21.230
	CRR073302	Leaf 3	22.752
	CRR073303	Juvenile bud 1	19.121
	CRR073304	Juvenile bud 2	20.828
	CRR073305	Juvenile bud 3	23.609
	CRR073306	Third green 1	5.380
	CRR073307	Third green 2	4.358
	CRR073308	Third green 3	4.915
	CRR073309	Second white 1	11.360
	CRR073310	Second white 2	7.075
	CRR073311	Second white 3	8.794
	CRR073312	Silver flowering 1	3.523
	CRR073313	Silver flowering 2	4.053
	CRR073314	Silver flowering 3	3.209
	CRR073315	Gold flowering 1	25.745
	CRR073316	Gold flowering 2	40.884
	CRR073317	Gold flowering 3	21.697
	CRR073318	Tawny withering 1	13.960
	CRR073319	Tawny withering 2	11.599
	CRR073320	Tawny withering 3	15.134