Gene detail

Detail information of GWHGAAZE026634

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076783.1	0	PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Sesamum indicum]
COG	YP_007082681.1	4E-112	gamma-glutamyl phosphate reductase
Swissprot	tr\|O04015\|P5CS_ACTDE	0	Gamma-glutamyl phosphate reductase
trEMBL	tr\|A0A022Q0D0\|A0A022Q0D0_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU19950.1}
TAIR10	AT3G55610.1	4E-156	delta 1-pyrroline-5-carboxylate synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7848261	7853366	+
GWHAAZE00000008	mRNA	7848261	7853366	+
GWHAAZE00000008	exon	7848261	7848299	+
GWHAAZE00000008	exon	7848499	7848588	+
GWHAAZE00000008	exon	7848835	7848921	+
GWHAAZE00000008	exon	7849049	7849135	+
GWHAAZE00000008	exon	7849228	7849324	+
GWHAAZE00000008	exon	7849825	7849928	+
GWHAAZE00000008	exon	7850197	7850272	+
GWHAAZE00000008	exon	7851329	7851479	+
GWHAAZE00000008	exon	7851570	7851638	+
GWHAAZE00000008	exon	7851758	7851824	+
GWHAAZE00000008	exon	7851920	7851990	+
GWHAAZE00000008	exon	7852792	7853366	+
GWHAAZE00000008	CDS	7848261	7848299	+
GWHAAZE00000008	CDS	7848499	7848588	+
GWHAAZE00000008	CDS	7848835	7848921	+
GWHAAZE00000008	CDS	7849049	7849135	+
GWHAAZE00000008	CDS	7849228	7849324	+
GWHAAZE00000008	CDS	7849825	7849928	+
GWHAAZE00000008	CDS	7850197	7850272	+
GWHAAZE00000008	CDS	7851329	7851479	+
GWHAAZE00000008	CDS	7851570	7851638	+
GWHAAZE00000008	CDS	7851758	7851824	+
GWHAAZE00000008	CDS	7851920	7851990	+
GWHAAZE00000008	CDS	7852792	7852876	+
GWHAAZE00000008	three_prime_UTR	7852877	7853366	+

Transcript Sequence
>GWHTAAZE026668 ATGGAAGAGCCAATTGGTCATGTTCTGAAGAAAACTGAGCTTGCTGATGGATTCATCTTAGAGAAAACATCATCTCCCTTGGGTGTTCTTCTGATTATATTTGAGTCTCGACCTGATGCGTTGGTTCAGATAGCTTCGCTAGCAATCAGAACTGGGAATGGGCTCCTTCTGAAAGGGGGTAAAGAGGCCAAACGATCAAATGCGATTTTGCACAAGGTTATTACTTCAGCCATCCCTGAAAGTGTTGGTGAAACACTAATTGGACTTGTCACTTCAAGAGAAGAAATATCTGATTTACTCAAGCTTGATGACGTTATAGATCTTGTGATTCCAAGAGGCAGCAATAAACTCGTTTCTCAAATCAAGACTTCTACAAAAATTCCGGTTCTTGGTCATGCTGATGGAATTTGCCATGTTTATGTTGACAAGTATGCCAATATGGAAATGGCAAAGCAAATTGTTTTGGATGCAAAAACAGATTATCCAGCAGCTTGTAATGCTATGGAAACACTTCTTGTTCATAAGGACCTGATGGAGACTGGTGGTCTTAATGATCTTATCATGGAGCTTCAAATCAAAGGTGTTACTGTTTATGGGGGTCCAACAGTGAGTCCGTTGCTGAACATTCCAAAGGCGCATTCACTTCATCACGAATACAATTCACTGTCATGCACTGTTGAAATTGTGGATGATGTTTATGCTGCCATTGAACATATACATGATCATGGAAGTGCGCATACTGATTGCATCGTAACAGAAGACTCTGAAATTGCAGAAGCCTTTCTACGTCAAGTCGACAGTGCCGCAGTATTTCACAATGCAAGTACAAGATTTTGTGACGGGTTTCGCTTTGGACTTGGTGCCGAGGTTGGCATTAGTACAAGTAGGATTCATGCTCGTGGTCCAGTAGGAATCGAAGGATTGCTAACAACTCGATGGCTTGCAAGAGGGCACGGGCAAGTGGTGGAAGGTGATAAAGGGGTTGTTTACACCCACAAAGACCTCGACCTGCAGCAGGCTTGAAAATCCAATTTGTTCAATTGAAAGCATTTGAACAGCCAAAGGGCATCTTCTCTGATAGCAAGAAGATATGAAGAGTTTCTGTTTTCAATTTTTGGTACATTTGACCCTTTTGCAGGAGCTGCCTTGTTTTATTGAAGCAAAATGGCCGGATTCTGGCCACCACTTCAAGCCGGCAAGTTAAGGGAATGAGCGTTTTCTTCATGTGTTGTACTGTAATATTGAATGTTTTCTTTGGAGTTGTTTTTTCTCGGCTTTAAGGTTTCAAATTCGCTGATTCTTATCTGAGTTACGTTTAGGGGTAGCTAGATATGTGTATTGGGCGTTGAATTGAAGTTTTAGTTATTTGGTTGTTGGGGAGAGAGAGGGTATACAGTTGGATATTTGATTGTAGAAACTTGTCAATTGAACTTCTAGTTACATTTATGTATTTTATGCAGTGCTGGTACAAGTACCATTTGTAAACAGGATTGGATTGAATGACTTGATTTCA

Network for GWHGAAZE026634

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12657	ALDH18A1, P5CS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006561	biological_process	proline biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004350	molecular_function	glutamate-5-semialdehyde dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	96.581
	SRR3591706	second leaf	51.921
	SRR3591707	mature leaf	26.376
	SRR3591708	Shoot apex	100.553
	SRR3591709	Stem	39.081
	SRR3591710	White floral bud	28.788
	SRR3591711	White flower	39.719
	SRR3591712	Green floral bud	41.468
	SRR3591713	Yellow flower	22.711
SRP173429	SRR8316895	Juvenile bud stage	36.000
	SRR8316896	Juvenile bud stage	30.295
	SRR8316897	Juvenile bud stage	29.146
	SRR8316894	Third green stage	14.590
	SRR8316900	Third green stage	32.163
	SRR8316901	Third green stage	30.342
	SRR8316898	Complete white stage	6.195
	SRR8316899	Complete white stage	26.051
	SRR8316903	Complete white stage	12.925
	SRR8316902	Silver flowering stage	6.827
	SRR8316904	Silver flowering stage	8.009
	SRR8316905	Silver flowering stage	4.059
	SRR8316906	Gold flowering stage	11.800
	SRR8316907	Gold flowering stage	9.103
	SRR8316908	Gold flowering stage	14.696
SRP132670	SRR6706286	Control	27.099
	SRR6706287	Light intensity 50%	25.538
	SRR6706288	Light intensity 20%	25.837
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.370
	CNS0095593	Slightly white alabastrum(diploid) 2	38.624
	CNS0095594	Slightly white alabastrum(diploid) 3	35.531
	CNS0095595	Whole white alabastrum(diploid) 2	26.395
	CNS0095596	Whole white alabastrum(diploid) 3	32.323
	CNS0095597	Whole white alabastrum(diploid) 4	22.305
	CNS0095598	Silvery flower (diploied) 1	63.288
	CNS0095599	Silvery flower (diploied) 2	67.072
	CNS0095600	Silvery flower (diploied) 3	24.677
	CNS0095601	Golden flower (diploid) 1	52.110
	CNS0095602	Golden flower (diploid) 2	25.728
	CNS0095603	Golden flower (diploid) 3	25.329
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.719
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.737
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.292
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.434
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.869
	CNS0095610	Silvery flower (tetraploid) 1	21.914
	CNS0095611	Silvery flower (tetraploid) 2	23.232
	CNS0095612	Silvery flower (tetraploid) 3	6.699
	CNS0095613	Golden flower (tetraploid) 1	13.637
	CNS0095614	Golden flower (tetraploid) 2	20.625
	CNS0095615	Golden flower (tetraploid) 3	6.325
CRA001975	CRR073297	Stem 1	36.174
	CRR073298	Stem 2	30.558
	CRR073299	Stem 3	26.268
	CRR073300	Leaf 1	18.586
	CRR073301	Leaf 2	23.493
	CRR073302	Leaf 3	21.461
	CRR073303	Juvenile bud 1	20.696
	CRR073304	Juvenile bud 2	8.779
	CRR073305	Juvenile bud 3	19.570
	CRR073306	Third green 1	1.180
	CRR073307	Third green 2	1.423
	CRR073308	Third green 3	1.376
	CRR073309	Second white 1	1.688
	CRR073310	Second white 2	0.936
	CRR073311	Second white 3	0.624
	CRR073312	Silver flowering 1	1.374
	CRR073313	Silver flowering 2	1.026
	CRR073314	Silver flowering 3	0.837
	CRR073315	Gold flowering 1	7.893
	CRR073316	Gold flowering 2	12.462
	CRR073317	Gold flowering 3	6.419
	CRR073318	Tawny withering 1	22.560
	CRR073319	Tawny withering 2	28.452
	CRR073320	Tawny withering 3	25.203