Gene detail

Detail information of GWHGAAZE026637

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282278.1	6.5573E-151	PREDICTED: eukaryotic translation initiation factor 3 subunit G-B [Vitis vinifera]
COG	YP_004252422.1	6E-12	RNP-1 like RNA-binding protein
Swissprot	tr\|Q9SEU4\|SRC33_ARATH	3E-12	Serine/arginine-rich SC35-like splicing factor SCL33
trEMBL	tr\|F6GUX9\|F6GUX9_VITVI	2E-151	Eukaryotic translation initiation factor 3 subunit G {ECO:0000256\|HAMAP-Rule:MF_03006}
TAIR10	AT3G11400.1	3E-104	eukaryotic translation initiation factor 3G1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7876044	7885341	+
GWHAAZE00000008	mRNA	7876044	7885341	+
GWHAAZE00000008	exon	7876044	7876153	+
GWHAAZE00000008	exon	7878541	7878641	+
GWHAAZE00000008	exon	7881167	7881430	+
GWHAAZE00000008	exon	7884803	7885341	+
GWHAAZE00000008	CDS	7876044	7876153	+
GWHAAZE00000008	CDS	7878541	7878641	+
GWHAAZE00000008	CDS	7881167	7881430	+
GWHAAZE00000008	CDS	7884803	7885341	+

Transcript Sequence
>GWHTAAZE026671 ATGCCCTTGCATAACAAATGTTCTCTCTTGGGCATTTCATCAAACAAGGTTGGTGCATTGCTTATCAATATGATCAAGTTCACTTCAACAGATTGCTCATCAATTACAAGCGGGACAAATGCAATCGCCAGCGGCATCGGGACGAGCGACGTGCAAGCAGTGACTAGAGTTCGAGGAGAGAGGAAGGAAAGAAAAAAGAGAAACAAAAGGGACGACGGCGAGGATTTGGACTTTTTGCTGCCGGACGAAAACGGGATAAAGAAGGTGATAGAGTGCAAGTTCCGTGACGATGGGAATAAGGTCCGGATCACCACCCCGACCCGGGTCCGAAAGCTAGCAAAGGACCGGCTCAGTAAGTGGGCCATCGAGCGACGGTCGTGGCCCAAGTTCGGCAACGCGGTTCACAAGGATGTTGGGAGTAGGCTCACTATGGTCTCCACCGAAGAGATCTTGCTCGAAAGACCTAGGGCTCCAGGTTCAAAACCCGAAGAATCCAGAGTGGCCGGAGACTCATTGGCTCAAATCAGCAAAGGAGGTGGTGCTGTTCTCATGGTGTGTAGAACTTGTGGCAAGAAAGGTGATCACTGGACCTCGAGGTGGCCTTACAAGGACCTGGCCCCACAAACGGAAGCCTTTGTCGATAAACCCACCACCTTGGATTCAGTCATGGCTTCTAGCTCGACTAAGGGGGCTTATGTGCCCCCAAGCATGAGAGCCGGGGCAGAGAGACCTGTGGGGTCTGACATGCGGCAAAGGAATGAAGAGAACTCCGTGCGTGTCACCAATTTATCAGAGGACATGCGCGAGGCGGACTTGCACGAGCTGTTCTGCACATTCGGCCCTGTGAGTCGCGTATATGTTGCTATCGACCAGAAGACTGGCGTTAGCCGAGGTTTTGGTTTCGTTAACTTTATGAACAAGGAAGATGCTGAACGGGCAATTATGAAGCTGAATGGGTATGGGTATCATAATATTATTCTTCGTGTTGAGTGGGCTACACCTAGAACAAACTAG

Network for GWHGAAZE026637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12353.9	eIF3g	80	205	7.80E-28
PF00076.23	RRM_1	258	323	6.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03248	EIF3G	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0003676	molecular_function	nucleic acid binding
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.520
	SRR3591706	second leaf	0.056
	SRR3591707	mature leaf	0.779
	SRR3591708	Shoot apex	0.213
	SRR3591709	Stem	1.047
	SRR3591710	White floral bud	0.491
	SRR3591711	White flower	0.420
	SRR3591712	Green floral bud	0.430
	SRR3591713	Yellow flower	0.243
SRP173429	SRR8316895	Juvenile bud stage	0.757
	SRR8316896	Juvenile bud stage	1.028
	SRR8316897	Juvenile bud stage	0.140
	SRR8316894	Third green stage	0.511
	SRR8316900	Third green stage	0.525
	SRR8316901	Third green stage	1.283
	SRR8316898	Complete white stage	0.118
	SRR8316899	Complete white stage	0.285
	SRR8316903	Complete white stage	0.347
	SRR8316902	Silver flowering stage	0.043
	SRR8316904	Silver flowering stage	0.188
	SRR8316905	Silver flowering stage	0.348
	SRR8316906	Gold flowering stage	0.757
	SRR8316907	Gold flowering stage	0.093
	SRR8316908	Gold flowering stage	0.095
SRP132670	SRR6706286	Control	0.506
	SRR6706287	Light intensity 50%	0.247
	SRR6706288	Light intensity 20%	0.240
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.584
	CNS0095593	Slightly white alabastrum(diploid) 2	1.089
	CNS0095594	Slightly white alabastrum(diploid) 3	4.371
	CNS0095595	Whole white alabastrum(diploid) 2	1.454
	CNS0095596	Whole white alabastrum(diploid) 3	1.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.673
	CNS0095598	Silvery flower (diploied) 1	0.440
	CNS0095599	Silvery flower (diploied) 2	0.538
	CNS0095600	Silvery flower (diploied) 3	0.821
	CNS0095601	Golden flower (diploid) 1	1.360
	CNS0095602	Golden flower (diploid) 2	0.933
	CNS0095603	Golden flower (diploid) 3	1.723
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.428
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.748
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.241
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.730
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.874
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.464
	CNS0095610	Silvery flower (tetraploid) 1	0.373
	CNS0095611	Silvery flower (tetraploid) 2	0.407
	CNS0095612	Silvery flower (tetraploid) 3	1.361
	CNS0095613	Golden flower (tetraploid) 1	0.289
	CNS0095614	Golden flower (tetraploid) 2	0.321
	CNS0095615	Golden flower (tetraploid) 3	0.131
CRA001975	CRR073297	Stem 1	0.545
	CRR073298	Stem 2	0.779
	CRR073299	Stem 3	1.008
	CRR073300	Leaf 1	0.308
	CRR073301	Leaf 2	0.454
	CRR073302	Leaf 3	0.339
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.131
	CRR073305	Juvenile bud 3	0.071
	CRR073306	Third green 1	0.242
	CRR073307	Third green 2	0.089
	CRR073308	Third green 3	0.241
	CRR073309	Second white 1	0.354
	CRR073310	Second white 2	0.150
	CRR073311	Second white 3	0.226
	CRR073312	Silver flowering 1	0.065
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.155
	CRR073316	Gold flowering 2	0.246
	CRR073317	Gold flowering 3	0.011
	CRR073318	Tawny withering 1	0.113
	CRR073319	Tawny withering 2	0.655
	CRR073320	Tawny withering 3	0.434