Gene detail

Detail information of GWHGAAZE026657

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283148.2	1.0012E-157	PREDICTED: E3 ubiquitin-protein ligase SDIR1 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9M2S6\|SDIR1_ARATH	1E-147	E3 ubiquitin-protein ligase SDIR1
trEMBL	tr\|D7TLR3\|D7TLR3_VITVI	4E-158	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31650.3}
TAIR10	AT3G55530.1	8E-97	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8212002	8215060	+
GWHAAZE00000008	mRNA	8212002	8215060	+
GWHAAZE00000008	exon	8212002	8212079	+
GWHAAZE00000008	exon	8212192	8212246	+
GWHAAZE00000008	exon	8212346	8212398	+
GWHAAZE00000008	exon	8212794	8213016	+
GWHAAZE00000008	exon	8213247	8213361	+
GWHAAZE00000008	exon	8213482	8213527	+
GWHAAZE00000008	exon	8213860	8213985	+
GWHAAZE00000008	exon	8214716	8215060	+
GWHAAZE00000008	CDS	8212002	8212079	+
GWHAAZE00000008	CDS	8212192	8212246	+
GWHAAZE00000008	CDS	8212346	8212398	+
GWHAAZE00000008	CDS	8212794	8213016	+
GWHAAZE00000008	CDS	8213247	8213361	+
GWHAAZE00000008	CDS	8213482	8213527	+
GWHAAZE00000008	CDS	8213860	8213985	+
GWHAAZE00000008	CDS	8214716	8214841	+
GWHAAZE00000008	three_prime_UTR	8214842	8215060	+

Transcript Sequence
>GWHTAAZE026691 ATGAGTTTTGTTTTCCGAGGGACTAGAGCAGATGTAGAAACAGGATTTCCAGGATTTGTTCCTGAGCGACGTGCAGTGCGTATTCATGCTGCCCGACCAGTTAATACAAATTCCCTTGCTTTTCTTGTTACTGTCCTCTTGCTATTCATGATTCTAAATTCTCACCAATTGTCTCCGAACTTTCTGGTCTGGCTGGTTCTTGGTGTATTTTTTATGGCAACAACCCTTAGGATGTATGCAACTTGTCAGCAACTTCAAGCCCAGGCCCATGCTGCAGCGTCCAGTGGGCTTTTAGGCCATACCGAATTGCGGTTACATATGCCACCATCGATAGCACTTGCAACAAGAGGGAGGTTACAAGGTCTCAGGCTCCAGCTTGCACTTCTTGACCGGGAATTTGATGACCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGAAAATGTCTCAACTGCCTCGTCAATGAGTGAGGAAGAGATAAATGCTCTTCCTGTTCACAAGTACAAGGTTGCTGACCCTAAAAGTGCCGTCTCATCAATGCAACAAGCTTCATCCTCAGCCTCAACTGAGAAGCACCAAGACAATTCGAATGCAGCTGCGAGCATGAAACTTTCAGAAGATGAACTAACTTGCACTGTTTGCTTGGAGCAAGTAAATGTGGGTGAACTCATCCGGAGCTTGCCTTGCTTACACCAGTTCCATGCAAATTGCATAGATCCATGGCTACGCCAGCAGGGAACGTGCCCCGTTTGTAAATTCAGAGCTGCTTCTGGATGGCGCGAGAATGAGCAAGAAAGAGCGGATGCTTCTTACATGGTGTAATCAATGGTGTTTGCGATCCTAACTATTAATCTATATGTAGCTGTGTATGAAGAGATATACACATGTATATATATACACTCAGATACAAATGAATTAGAAGGGAAGAGGTATATTTTACCAGTAGGGTAATTTTCTTGACATAATTCAGAGGGATTGTATGACATTTTGAGATTAGACAATGCAGGGGCTATTAAAGTACCGACAGGAAAGTTTTACTTT

Network for GWHGAAZE026657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	210	252	4.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.671
	SRR3591706	second leaf	6.190
	SRR3591707	mature leaf	5.684
	SRR3591708	Shoot apex	11.525
	SRR3591709	Stem	8.460
	SRR3591710	White floral bud	9.118
	SRR3591711	White flower	7.524
	SRR3591712	Green floral bud	8.050
	SRR3591713	Yellow flower	12.199
SRP173429	SRR8316895	Juvenile bud stage	5.086
	SRR8316896	Juvenile bud stage	6.787
	SRR8316897	Juvenile bud stage	4.178
	SRR8316894	Third green stage	3.249
	SRR8316900	Third green stage	7.006
	SRR8316901	Third green stage	7.242
	SRR8316898	Complete white stage	3.375
	SRR8316899	Complete white stage	8.474
	SRR8316903	Complete white stage	4.314
	SRR8316902	Silver flowering stage	4.857
	SRR8316904	Silver flowering stage	7.073
	SRR8316905	Silver flowering stage	3.234
	SRR8316906	Gold flowering stage	9.389
	SRR8316907	Gold flowering stage	6.987
	SRR8316908	Gold flowering stage	7.652
SRP132670	SRR6706286	Control	6.021
	SRR6706287	Light intensity 50%	5.448
	SRR6706288	Light intensity 20%	4.773
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.696
	CNS0095593	Slightly white alabastrum(diploid) 2	7.768
	CNS0095594	Slightly white alabastrum(diploid) 3	9.161
	CNS0095595	Whole white alabastrum(diploid) 2	6.467
	CNS0095596	Whole white alabastrum(diploid) 3	5.679
	CNS0095597	Whole white alabastrum(diploid) 4	6.196
	CNS0095598	Silvery flower (diploied) 1	10.516
	CNS0095599	Silvery flower (diploied) 2	5.396
	CNS0095600	Silvery flower (diploied) 3	7.210
	CNS0095601	Golden flower (diploid) 1	8.164
	CNS0095602	Golden flower (diploid) 2	13.822
	CNS0095603	Golden flower (diploid) 3	12.772
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.739
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.676
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.524
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.179
	CNS0095610	Silvery flower (tetraploid) 1	7.581
	CNS0095611	Silvery flower (tetraploid) 2	7.595
	CNS0095612	Silvery flower (tetraploid) 3	5.743
	CNS0095613	Golden flower (tetraploid) 1	5.693
	CNS0095614	Golden flower (tetraploid) 2	7.437
	CNS0095615	Golden flower (tetraploid) 3	6.494
CRA001975	CRR073297	Stem 1	8.212
	CRR073298	Stem 2	7.435
	CRR073299	Stem 3	7.273
	CRR073300	Leaf 1	7.190
	CRR073301	Leaf 2	7.896
	CRR073302	Leaf 3	4.370
	CRR073303	Juvenile bud 1	7.810
	CRR073304	Juvenile bud 2	2.902
	CRR073305	Juvenile bud 3	5.610
	CRR073306	Third green 1	5.184
	CRR073307	Third green 2	3.730
	CRR073308	Third green 3	4.369
	CRR073309	Second white 1	4.477
	CRR073310	Second white 2	5.029
	CRR073311	Second white 3	3.541
	CRR073312	Silver flowering 1	6.622
	CRR073313	Silver flowering 2	6.279
	CRR073314	Silver flowering 3	6.341
	CRR073315	Gold flowering 1	5.276
	CRR073316	Gold flowering 2	6.559
	CRR073317	Gold flowering 3	3.236
	CRR073318	Tawny withering 1	8.506
	CRR073319	Tawny withering 2	5.793
	CRR073320	Tawny withering 3	9.406