Gene detail

Detail information of GWHGAAZE026662

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00108.1	1.17955E-85	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4JH53\|FDM2_ARATH	8E-56	Factor of DNA methylation 2 {ECO:0000303\|PubMed:22302148}
trEMBL	tr\|A0A068TXN3\|A0A068TXN3_COFCA	4E-86	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00108.1}
TAIR10	AT4G00380.1	5E-48	XH/XS domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8308523	8316774	-
GWHAAZE00000008	mRNA	8308523	8316774	-
GWHAAZE00000008	exon	8316594	8316774	-
GWHAAZE00000008	exon	8315736	8315956	-
GWHAAZE00000008	exon	8314533	8314715	-
GWHAAZE00000008	exon	8313917	8314126	-
GWHAAZE00000008	exon	8313379	8313555	-
GWHAAZE00000008	exon	8312583	8312658	-
GWHAAZE00000008	exon	8310143	8310888	-
GWHAAZE00000008	exon	8309508	8309639	-
GWHAAZE00000008	exon	8309032	8309244	-
GWHAAZE00000008	exon	8308523	8308768	-
GWHAAZE00000008	CDS	8316594	8316774	-
GWHAAZE00000008	CDS	8315736	8315956	-
GWHAAZE00000008	CDS	8314533	8314715	-
GWHAAZE00000008	CDS	8313917	8314126	-
GWHAAZE00000008	CDS	8313379	8313555	-
GWHAAZE00000008	CDS	8312583	8312658	-
GWHAAZE00000008	CDS	8310143	8310888	-
GWHAAZE00000008	CDS	8309508	8309639	-
GWHAAZE00000008	CDS	8309032	8309244	-
GWHAAZE00000008	CDS	8308523	8308768	-

Transcript Sequence
>GWHTAAZE026696 ATGGAGGATGAGATGGTAGAGGAGCTCCAAAGGGCACGTAGCTTGGCTGTAAGCCTTGCGAGAGAAGTTGATAGGAAGAATGAATTGTTGTGGGAACTGGAGTGCAAGTATGATGAAGCTTCAGAGACCCTTGGGAGGATGATTGCGGAGAAAGATAGGATGGAACAAGCTTATGTGGAAGAAATGAGAAAATTTCAGTTCATGGGGTTACAAAATGAAAAGCTGAAGAATGAAATGGAATGTCAAATGCGGAAGATGCATTCTAGCGAACTTGAAAATGAAAAGCTGAAAGAGGACTTGTTCTATCAGCAAAAAGAACTTGAGCAACAAGCTAAAATTTTGAAGGAACAAGAGGCTCAGAATGACATCGACCGCAAAAATTTCCTCATTGAGATGGAAAAATTGAAAGCTCAAAACCCGTTTGAGAGTGACTACAGTCTCATTGTCCAGATCGATGAGTTAAAGAAAGAATTGGATGAAAAAGTAGACGAGTTGCATGATATGGAGATCTTGAATCAAACTCTTATACTTAGAGAGCGCGTGTGTAATGATGAGATACAAGATGCTCGCAAAGAACTGATTAATGTTTTGCCAAATCTGTTGGAAAAAGCAAGCGTTGGGGTGAAAAGGATGGGAGAGGTTGATCAGAAACCTTTTCAAACCGCGTGCTTTCAGCAGTTTCCTCGGCAAGAATGGGAGCTGAGATCTGTGGAGCTAAGCTCATTGTGGCAAGAGAAGTTGAAAAATGGAAATTGGTATCCCTTCAAGAAAGTCATTAAAGATGGAGAGTTGCAGGAAATTATCGATGAAGAAGACAACCAGTTGAAAGAATTGAGAAGGCAATGGGGAGAGGGTGTGTACAATGCTGTAGTGAATGCACTTTTGGAATTAAACGAATATAATCCAAGCGGGAGGTACGTTGTGTCAGAACTTTGGAACTTCAAGGAAGAAAGGAAAGCGACTCTTAAAGAGACAATCTCCATTGGTATGGAGAAAGCCTATAATTTAGCCATTCTTTCATACAACGGTTGTGGTAATAGTGGAACAGGGACGCAAGAAATGGAAAGCATAAAAGAAGAGAACGAAAATCTGAAATCTGAAATGGAATCTCTAAAGAAAGATTTTGAGAAGGAAATGGAGGAGAATCAATACATTTATGAGTTAGAGAGAAAAAAATTTATGGAAGAAAAAGAAAAGCTAATGTTCCAAATAGAATCCCAAAAGCTCCACGGAATGAAGAAGTCGAACCAAGAATACATACATAACTTGGAGCGAACAACATTAATGGCCGAGAATGAAAAAATGAAGTACGAGATTGAATCTCAAAAGAGAGAATTAGAACGTAAAGCAAAGGAACTAAAAGATAGTGGATACATAAATGATTTGGAGCGACAAAAATTATTGGCCGAGAACGAAAACATGAGGTACGAAATTGTGTCTCAGAGAATGGAGTTGAAGGAATTGAAAGAACACGGGTACATAAATGAGTTGGAGCAGAAAAATTTAGTGGAGGAGAAGGAAAAGTTGAAGAATGAAATTGAATCATTTGAGCAGCGAATTAAGGATTTGGAGCATGAATATTTGAATAATTTGGAGGTAAACAAATTAATGAAGGAATCTCAAGAGAAAGTAATTAATGGATACACACATGAGCAGGAGGAAAAGAAATTAATGGCGGAGGAGGAAGAAGAGAAAGATGGAAATGGAATTCAAAGGAAAGAATTTCACTGGCAAGAAAAGGGTGTGGAGGAAAATGAGATGGAAGAAAGCAATTTGATGGCTGATAAAGATAAGACGGAGTTGATCGAAAAGTTGAAAGTGGAGGAAAATGAAAACCAATGCTTGAACAATGATATTCAAGTACTGATGCTTAAAGAGCGCATAAGCAACGACGAGCTGCAAGAAGCTCGCAAAGAAGCCATAAAGGGTTTGAGTGATACACTGAGCAATCGGACATTGTTTGTGATTAAAAGAATGGGGGAGATTGATATAAAACCTTTTCAAGAAATGTGCAAGCAAAAATACTCTAGTGGAGAATGGGAGGAGCAATGTGTTAAACTATGTTCGGCTTGGGCAGAAAATGTGAAAGATCCACAATGGCAACCATTCAAGAAAGCTACCGTCAATGGGAGATTGCAAGAAATAATAGATGAAAATGATGAAAAACTGGAGAAGTTGAGAAATGAATGGGGTGAGCAGGTGTGCAAGGCCGTCACCGATGCACTTATGCAATTAAACGAGTATAATCCAAGTGGGAGGTATCCGGTTCCCGAGCTTTGGAATTCAAGGGAGAACAAAAAAGCGAGGCTGAAAGAGATCATTGAATACATAATCAAGAGTTGGAGGAGTTGTAAGAATCACAAGCGCAAAAGAATAGAAGGCTAA

Network for GWHGAAZE026662

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0059

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03469.15	XH	209	332	1.10E-48
PF03469.15	XH	657	786	1.20E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.571
	SRR3591706	second leaf	8.933
	SRR3591707	mature leaf	9.847
	SRR3591708	Shoot apex	16.818
	SRR3591709	Stem	18.810
	SRR3591710	White floral bud	7.386
	SRR3591711	White flower	8.191
	SRR3591712	Green floral bud	8.224
	SRR3591713	Yellow flower	7.671
SRP173429	SRR8316895	Juvenile bud stage	3.846
	SRR8316896	Juvenile bud stage	5.372
	SRR8316897	Juvenile bud stage	1.695
	SRR8316894	Third green stage	1.761
	SRR8316900	Third green stage	4.035
	SRR8316901	Third green stage	3.920
	SRR8316898	Complete white stage	2.480
	SRR8316899	Complete white stage	6.134
	SRR8316903	Complete white stage	3.946
	SRR8316902	Silver flowering stage	2.630
	SRR8316904	Silver flowering stage	5.222
	SRR8316905	Silver flowering stage	1.976
	SRR8316906	Gold flowering stage	7.282
	SRR8316907	Gold flowering stage	7.003
	SRR8316908	Gold flowering stage	6.491
SRP132670	SRR6706286	Control	3.242
	SRR6706287	Light intensity 50%	3.095
	SRR6706288	Light intensity 20%	2.996
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.145
	CNS0095593	Slightly white alabastrum(diploid) 2	3.676
	CNS0095594	Slightly white alabastrum(diploid) 3	4.917
	CNS0095595	Whole white alabastrum(diploid) 2	3.878
	CNS0095596	Whole white alabastrum(diploid) 3	3.940
	CNS0095597	Whole white alabastrum(diploid) 4	4.145
	CNS0095598	Silvery flower (diploied) 1	5.101
	CNS0095599	Silvery flower (diploied) 2	2.989
	CNS0095600	Silvery flower (diploied) 3	4.750
	CNS0095601	Golden flower (diploid) 1	5.022
	CNS0095602	Golden flower (diploid) 2	3.504
	CNS0095603	Golden flower (diploid) 3	3.682
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.170
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.196
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.756
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.155
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.283
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.053
	CNS0095610	Silvery flower (tetraploid) 1	8.302
	CNS0095611	Silvery flower (tetraploid) 2	7.020
	CNS0095612	Silvery flower (tetraploid) 3	7.470
	CNS0095613	Golden flower (tetraploid) 1	9.299
	CNS0095614	Golden flower (tetraploid) 2	9.843
	CNS0095615	Golden flower (tetraploid) 3	7.671
CRA001975	CRR073297	Stem 1	5.020
	CRR073298	Stem 2	4.642
	CRR073299	Stem 3	2.420
	CRR073300	Leaf 1	5.012
	CRR073301	Leaf 2	3.818
	CRR073302	Leaf 3	2.175
	CRR073303	Juvenile bud 1	2.775
	CRR073304	Juvenile bud 2	1.818
	CRR073305	Juvenile bud 3	2.109
	CRR073306	Third green 1	1.670
	CRR073307	Third green 2	1.041
	CRR073308	Third green 3	2.590
	CRR073309	Second white 1	0.612
	CRR073310	Second white 2	3.168
	CRR073311	Second white 3	2.560
	CRR073312	Silver flowering 1	0.556
	CRR073313	Silver flowering 2	1.082
	CRR073314	Silver flowering 3	0.982
	CRR073315	Gold flowering 1	3.070
	CRR073316	Gold flowering 2	4.567
	CRR073317	Gold flowering 3	1.439
	CRR073318	Tawny withering 1	3.619
	CRR073319	Tawny withering 2	2.815
	CRR073320	Tawny withering 3	3.650