Gene detail

Detail information of GWHGAAZE026664

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007009303.1	0	Affected trafxn,cking 2 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9M2T1\|AP3BA_ARATH	8E-108	AP3-complex subunit beta-A
trEMBL	tr\|A0A061FTS2\|A0A061FTS2_THECC	0	AP-3 complex subunit beta {ECO:0000256\|PIRNR:PIRNR037096}
TAIR10	AT3G55480.2	5E-132	protein affected trafﬁcking 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8331105	8335074	+
GWHAAZE00000008	mRNA	8331105	8335074	+
GWHAAZE00000008	exon	8331105	8331317	+
GWHAAZE00000008	exon	8331776	8331852	+
GWHAAZE00000008	exon	8333396	8333447	+
GWHAAZE00000008	exon	8333539	8333748	+
GWHAAZE00000008	exon	8334442	8335074	+
GWHAAZE00000008	CDS	8331105	8331317	+
GWHAAZE00000008	CDS	8331776	8331852	+
GWHAAZE00000008	CDS	8333396	8333447	+
GWHAAZE00000008	CDS	8333539	8333748	+
GWHAAZE00000008	CDS	8334442	8335074	+

Transcript Sequence
>GWHTAAZE026698 ATGTTTCCGCAATTCGCGAGCGCGGAGAGCCTGAGCAAAGCATCGACGATGGTATTCCGAATGGGGACGGATGCTCACCTCTACGACGATCCCGAAGACGTAAACATAGCCCCTCTCCTCGACAGCAAATTCGACTCCGAGAAATGCGAAGCTCTCAAGCGCTTGCTCGCTCTCATCGCCCAGGGATTCGATGTCTGCAATTTCTTCCCTCAGGTGGTTAAGAATGTGGCGTCTCAGTCTCTGGAAGTGAAGAAACTGGTTTACTTGTATTTACTGCATTATGCTGAAAAGCTACTGTGTAAAACTGTAAATGGTGGTTCAGCTTTAAATTTGAAATGCAAGAAGGATTTGGGGGATACAAATCCATTGGTGCGGGCATGGGCGCTTCGTGCTATGGCAGGGATCCGTTTACATGTTGTTGCTCCACTTGTTTTAGCGGCAGTGGGCAAATGTGCTAGAGATCCTTCTGTTTATGTGAGAAAATGCGCTGCCAATGCTCTTCCAAAGTTGCATGATTTGCGCATGGAGGAAAATACTATAGCAGTTGAAGAGATTGTTGCAATATTGTTGAATGACCATTCTCCCGGAGTTGTTGGAGCTGCTGCTGCAGCATTTGCTTCTGTTTGTCCAAACAATTTGCCTCTCATTGCTAAAAACTATAAAAGATTGTGTCAAACTCTTCCTGATGTTGAAGAGTGGGGCCAGATTATCTTAATCGGGATCCTCTTGCGTTATGCAATTGCTAGACATGGGCTTGTAAAGGAATCAATTATGTTATCTTCATGTTCTGAGAATTATAATCCTGAAAAGGACGGGTCAAATATTGACGATGCACTAGAAGAAAAAACAATTGAGATTGGCAGTGGGATATATGAGTCTGAATTTGCAGATTTGATCTCCAGAAATTATCTTGAAGGACCAGATAAATATTTATCACAGTCGAGTTATGAGGATAATTCCGGTCAACTAGATCTTTCGCATTTTACATCTGCTAAAAGTAATGAAGACGTGAAGATCCTTCTGCAGTGTACTTCACCTCTGTTGTGGAGTCATAATAGTGCAGTGGTACTTGCTGCTGCTGGGGTACACTGGATTATGGCACCAAAGGAAGGCATCAGAAAAATTGTTAAACCACTCTTGTTTATCCTGAGATCTTCTAGTTCCTCAAAATACGTGGTATCTTAA

Network for GWHGAAZE026664

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.21	Adaptin_N	38	393	4.40E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12397	AP3B	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030117	cellular_component	membrane coat

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.175
	SRR3591706	second leaf	5.830
	SRR3591707	mature leaf	4.747
	SRR3591708	Shoot apex	7.254
	SRR3591709	Stem	11.830
	SRR3591710	White floral bud	7.245
	SRR3591711	White flower	5.666
	SRR3591712	Green floral bud	9.417
	SRR3591713	Yellow flower	4.262
SRP173429	SRR8316895	Juvenile bud stage	4.598
	SRR8316896	Juvenile bud stage	8.804
	SRR8316897	Juvenile bud stage	4.122
	SRR8316894	Third green stage	4.282
	SRR8316900	Third green stage	8.144
	SRR8316901	Third green stage	7.534
	SRR8316898	Complete white stage	3.959
	SRR8316899	Complete white stage	9.749
	SRR8316903	Complete white stage	6.207
	SRR8316902	Silver flowering stage	1.641
	SRR8316904	Silver flowering stage	3.150
	SRR8316905	Silver flowering stage	1.170
	SRR8316906	Gold flowering stage	5.558
	SRR8316907	Gold flowering stage	3.418
	SRR8316908	Gold flowering stage	7.649
SRP132670	SRR6706286	Control	7.014
	SRR6706287	Light intensity 50%	6.947
	SRR6706288	Light intensity 20%	8.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.206
	CNS0095593	Slightly white alabastrum(diploid) 2	2.232
	CNS0095594	Slightly white alabastrum(diploid) 3	2.096
	CNS0095595	Whole white alabastrum(diploid) 2	3.327
	CNS0095596	Whole white alabastrum(diploid) 3	2.280
	CNS0095597	Whole white alabastrum(diploid) 4	3.474
	CNS0095598	Silvery flower (diploied) 1	5.620
	CNS0095599	Silvery flower (diploied) 2	4.760
	CNS0095600	Silvery flower (diploied) 3	8.991
	CNS0095601	Golden flower (diploid) 1	3.748
	CNS0095602	Golden flower (diploid) 2	11.539
	CNS0095603	Golden flower (diploid) 3	11.302
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.799
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.424
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.631
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.992
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.931
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.760
	CNS0095610	Silvery flower (tetraploid) 1	9.767
	CNS0095611	Silvery flower (tetraploid) 2	11.865
	CNS0095612	Silvery flower (tetraploid) 3	8.303
	CNS0095613	Golden flower (tetraploid) 1	3.244
	CNS0095614	Golden flower (tetraploid) 2	7.911
	CNS0095615	Golden flower (tetraploid) 3	9.366
CRA001975	CRR073297	Stem 1	5.275
	CRR073298	Stem 2	8.290
	CRR073299	Stem 3	6.213
	CRR073300	Leaf 1	8.723
	CRR073301	Leaf 2	6.307
	CRR073302	Leaf 3	5.351
	CRR073303	Juvenile bud 1	4.170
	CRR073304	Juvenile bud 2	3.976
	CRR073305	Juvenile bud 3	7.041
	CRR073306	Third green 1	1.395
	CRR073307	Third green 2	1.111
	CRR073308	Third green 3	1.443
	CRR073309	Second white 1	1.672
	CRR073310	Second white 2	1.503
	CRR073311	Second white 3	1.329
	CRR073312	Silver flowering 1	1.066
	CRR073313	Silver flowering 2	2.633
	CRR073314	Silver flowering 3	0.493
	CRR073315	Gold flowering 1	1.407
	CRR073316	Gold flowering 2	3.642
	CRR073317	Gold flowering 3	1.975
	CRR073318	Tawny withering 1	3.711
	CRR073319	Tawny withering 2	2.110
	CRR073320	Tawny withering 3	2.817