Detail information of GWHGAAZE026670


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002316287.23.9682E-104Triosephosphate isomerase family protein [Populus trichocarpa]
COGYP_001995455.13E-53triosephosphate isomerase
Swissprottr|P48495|TPIS_PETHY2E-102Triosephosphate isomerase, cytosolic
trEMBLtr|A9P7V6|A9P7V6_POPTR1E-104Triosephosphate isomerase {ECO:0000256|RuleBase:RU000517}
TAIR10AT3G55440.13E-79triosephosphate isomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene83996098402910-
GWHAAZE00000008mRNA83996098402910-
GWHAAZE00000008exon84027608402910-
GWHAAZE00000008exon84022628402385-
GWHAAZE00000008exon84016448401728-
GWHAAZE00000008exon84014068401538-
GWHAAZE00000008exon84008718400965-
GWHAAZE00000008exon84006328400710-
GWHAAZE00000008exon83997468399828-
GWHAAZE00000008exon83996098399653-
GWHAAZE00000008five_prime_UTR84027608402910-
GWHAAZE00000008five_prime_UTR84022628402385-
GWHAAZE00000008five_prime_UTR84017228401728-
GWHAAZE00000008CDS84016448401721-
GWHAAZE00000008CDS84014068401538-
GWHAAZE00000008CDS84008718400965-
GWHAAZE00000008CDS84006328400710-
GWHAAZE00000008CDS83997468399828-
GWHAAZE00000008CDS83996098399653-
Transcript Sequence

Network for GWHGAAZE026670

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00121.19TIM11631.80E-64
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01803TPI, tpiA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Fructose and mannose metabolismmap00051
Inositol phosphate metabolismmap00562
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0004807molecular_functiontriose-phosphate isomerase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf116.705
SRR3591706second leaf26.897
SRR3591707mature leaf5.157
SRR3591708Shoot apex65.488
SRR3591709Stem30.767
SRR3591710White floral bud45.016
SRR3591711White flower84.713
SRR3591712Green floral bud158.020
SRR3591713Yellow flower88.515
SRP173429 SRR8316895Juvenile bud stage 63.724
SRR8316896Juvenile bud stage 142.881
SRR8316897Juvenile bud stage 70.952
SRR8316894Third green stage 58.927
SRR8316900Third green stage 250.868
SRR8316901Third green stage 231.256
SRR8316898Complete white stage 44.890
SRR8316899Complete white stage 78.411
SRR8316903Complete white stage 44.906
SRR8316902Silver flowering stage44.646
SRR8316904Silver flowering stage48.968
SRR8316905Silver flowering stage22.192
SRR8316906Gold flowering stage 109.724
SRR8316907Gold flowering stage 117.599
SRR8316908Gold flowering stage 119.338
SRP132670SRR6706286Control128.964
SRR6706287Light intensity 50%124.728
SRR6706288Light intensity 20%139.848
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1150.338
CNS0095593Slightly white alabastrum(diploid) 2139.512
CNS0095594Slightly white alabastrum(diploid) 3144.789
CNS0095595Whole white alabastrum(diploid) 2149.066
CNS0095596Whole white alabastrum(diploid) 3195.006
CNS0095597Whole white alabastrum(diploid) 4132.606
CNS0095598Silvery flower (diploied) 129.508
CNS0095599Silvery flower (diploied) 242.648
CNS0095600Silvery flower (diploied) 355.998
CNS0095601Golden flower (diploid) 142.384
CNS0095602Golden flower (diploid) 240.595
CNS0095603Golden flower (diploid) 344.050
CNS0095604Slightly white alabastrum(tetraploid) 1206.560
CNS0095605Slightly white alabastrum(tetraploid) 2183.879
CNS0095606Slightly white alabastrum(tetraploid) 375.968
CNS0095607Whole white alabastrum(tetraploid) 1215.175
CNS0095608Whole white alabastrum(tetraploid) 2241.833
CNS0095609Whole white alabastrum(tetraploid) 3220.411
CNS0095610Silvery flower (tetraploid) 159.653
CNS0095611Silvery flower (tetraploid) 260.954
CNS0095612Silvery flower (tetraploid) 361.738
CNS0095613Golden flower (tetraploid) 165.953
CNS0095614Golden flower (tetraploid) 269.951
CNS0095615Golden flower (tetraploid) 359.355
CRA001975CRR073297Stem 197.114
CRR073298Stem 292.654
CRR073299Stem 3103.383
CRR073300Leaf 1124.640
CRR073301Leaf 2129.139
CRR073302Leaf 3183.971
CRR073303Juvenile bud 1157.587
CRR073304Juvenile bud 2160.848
CRR073305Juvenile bud 360.185
CRR073306Third green 180.110
CRR073307Third green 282.299
CRR073308Third green 350.627
CRR073309Second white 1105.521
CRR073310Second white 278.173
CRR073311Second white 355.077
CRR073312Silver flowering 155.119
CRR073313Silver flowering 246.875
CRR073314Silver flowering 339.060
CRR073315Gold flowering 113.073
CRR073316Gold flowering 217.769
CRR073317Gold flowering 315.423
CRR073318Tawny withering 181.736
CRR073319Tawny withering 289.643
CRR073320Tawny withering 366.726