Gene detail

Detail information of GWHGAAZE026674

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283615.1	1.4781E-154	PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Vitis vinifera]
COG	YP_008088145.1	2E-31	Glycosyltransferases involved in cell wall biogenesis
trEMBL	tr\|D7TLU1\|D7TLU1_VITVI	6E-155	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31678.3}
TAIR10	AT2G39630.1	4E-103	Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8467520	8473895	+
GWHAAZE00000008	mRNA	8467520	8473895	+
GWHAAZE00000008	exon	8467520	8467632	+
GWHAAZE00000008	exon	8467719	8467767	+
GWHAAZE00000008	exon	8470997	8471131	+
GWHAAZE00000008	exon	8471269	8471358	+
GWHAAZE00000008	exon	8471834	8471965	+
GWHAAZE00000008	exon	8472935	8473018	+
GWHAAZE00000008	exon	8473179	8473243	+
GWHAAZE00000008	exon	8473356	8473895	+
GWHAAZE00000008	CDS	8467520	8467632	+
GWHAAZE00000008	CDS	8467719	8467767	+
GWHAAZE00000008	CDS	8470997	8471131	+
GWHAAZE00000008	CDS	8471269	8471358	+
GWHAAZE00000008	CDS	8471834	8471965	+
GWHAAZE00000008	CDS	8472935	8473018	+
GWHAAZE00000008	CDS	8473179	8473243	+
GWHAAZE00000008	CDS	8473356	8473542	+
GWHAAZE00000008	three_prime_UTR	8473543	8473895	+

Transcript Sequence
>GWHTAAZE026708 ATGGGGTGGGCGTGGACGATCGTGGAATTCACCTTCCTCTTAGCTCTCCTTGTTGCCTTAGGGTTACTAGCTGCGATTTCTTTTGAAACATTCAGAAGAAGATTCAACCACGCTCACCTTGAAGCTCATCCGATTTTCGAGGATCCAAATTCACTGAAACAGGTGATAATTGTTGATGATGGAAGTGCTGATGAAACAAAGAGAGTAGCTTTTAATTTTGTGAGGAAATATTCAGTAGACAAAGTGAGGGTCATTCTTTTGGGTAGAAATTATGGCAAGGGAGAAGCTATAAGAAAAGGAATGCTTCATTCACGTGGTGAACTACTTCTAATGCTGGATGCTGATGGGGCAACGAAAGTTGATGACCTAGAAAAACTTGAAAATGAGATCCTTGCAGTTGCTAATAAGGAACATCATTTTGGAGATTCAGGATCTAGTGGTTCAAGTCTACCAATGTCAGATATCCCTGTTGTGGCATTTGGTTCTCGTGCACATCTTGAAGAGAAGGCTCTAGCAACAAGAAAGTGGTATCGCAATTTCTTAATGAAGGGTTTCCATATTGTGGTCCTCTTGGCTGCTGGTCCAGGAATTCGCGATACACAGTGTGGTTTTAAGATGTTTACTAGAGCTGCTGCAAGGAAGCTTTTCACGAACATCCGTTTGAAGAGGTGGTGCTTTGATGTGGAGTTGGTATACTTGTGCAAATGGTTTCGGATCCCAATAAAAGAGATATCAGTGAAGTGGTCGGAAATACCAGGATCAAAGGTGAACCCATTAAGCATCCCCAACATGCTTTGGGAAATGGCACTCATGTCTTTAGGTTACAGGGCTGGCATCTGGAAAGTGTCTTCTTGATTCAAAATGCTTTAGTAGGAAGTTCAACCTATAACTTTCAGTGACACTCAGTTTAGCACAAACCCAGGAAGAGAAGGAAAAGAAACACGATGCATTATTTGTTCAACCTTCCAGTTAGGCAAAGTTGTAAGACATACAAAACTTTTATACAAGTGGATACATGAGCGCGCTTGCTTTTGTGTGAGCAAAGATTGGTCTCATACCCCTGAGTGTAGAGGTTAATTTGAGAAACCACTGCCTTTCTTTCCATTTTAGTGTATACATTTTGCTATTTTGACATCCTGATTTACTGATGAAAACTTCATTCGCAGAAATCGGCTGTTTGGACTTAGATGGATGGCCGTAGTTAGATA

Network for GWHGAAZE026674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00535.27	Glycos_transf_2	48	131	1.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00729	ALG5	Metabolic pathways	map01100
K00729	ALG5	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.762
	SRR3591706	second leaf	21.827
	SRR3591707	mature leaf	20.480
	SRR3591708	Shoot apex	40.202
	SRR3591709	Stem	45.703
	SRR3591710	White floral bud	34.588
	SRR3591711	White flower	32.121
	SRR3591712	Green floral bud	31.668
	SRR3591713	Yellow flower	37.503
SRP173429	SRR8316895	Juvenile bud stage	19.438
	SRR8316896	Juvenile bud stage	25.727
	SRR8316897	Juvenile bud stage	12.257
	SRR8316894	Third green stage	10.877
	SRR8316900	Third green stage	24.803
	SRR8316901	Third green stage	22.969
	SRR8316898	Complete white stage	14.929
	SRR8316899	Complete white stage	38.182
	SRR8316903	Complete white stage	26.622
	SRR8316902	Silver flowering stage	17.506
	SRR8316904	Silver flowering stage	25.066
	SRR8316905	Silver flowering stage	11.672
	SRR8316906	Gold flowering stage	38.000
	SRR8316907	Gold flowering stage	34.534
	SRR8316908	Gold flowering stage	43.721
SRP132670	SRR6706286	Control	7.216
	SRR6706287	Light intensity 50%	9.072
	SRR6706288	Light intensity 20%	9.051
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.042
	CNS0095593	Slightly white alabastrum(diploid) 2	27.525
	CNS0095594	Slightly white alabastrum(diploid) 3	24.663
	CNS0095595	Whole white alabastrum(diploid) 2	20.934
	CNS0095596	Whole white alabastrum(diploid) 3	20.597
	CNS0095597	Whole white alabastrum(diploid) 4	18.728
	CNS0095598	Silvery flower (diploied) 1	25.407
	CNS0095599	Silvery flower (diploied) 2	25.643
	CNS0095600	Silvery flower (diploied) 3	28.610
	CNS0095601	Golden flower (diploid) 1	27.368
	CNS0095602	Golden flower (diploid) 2	21.244
	CNS0095603	Golden flower (diploid) 3	21.525
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.917
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.002
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.703
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.895
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.874
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.152
	CNS0095610	Silvery flower (tetraploid) 1	33.795
	CNS0095611	Silvery flower (tetraploid) 2	27.665
	CNS0095612	Silvery flower (tetraploid) 3	26.699
	CNS0095613	Golden flower (tetraploid) 1	27.571
	CNS0095614	Golden flower (tetraploid) 2	30.777
	CNS0095615	Golden flower (tetraploid) 3	24.825
CRA001975	CRR073297	Stem 1	18.791
	CRR073298	Stem 2	18.453
	CRR073299	Stem 3	14.544
	CRR073300	Leaf 1	15.165
	CRR073301	Leaf 2	14.907
	CRR073302	Leaf 3	10.202
	CRR073303	Juvenile bud 1	13.091
	CRR073304	Juvenile bud 2	8.699
	CRR073305	Juvenile bud 3	11.336
	CRR073306	Third green 1	8.797
	CRR073307	Third green 2	7.645
	CRR073308	Third green 3	9.327
	CRR073309	Second white 1	9.285
	CRR073310	Second white 2	10.434
	CRR073311	Second white 3	10.904
	CRR073312	Silver flowering 1	8.082
	CRR073313	Silver flowering 2	9.024
	CRR073314	Silver flowering 3	10.144
	CRR073315	Gold flowering 1	5.506
	CRR073316	Gold flowering 2	8.087
	CRR073317	Gold flowering 3	3.502
	CRR073318	Tawny withering 1	18.274
	CRR073319	Tawny withering 2	25.499
	CRR073320	Tawny withering 3	17.076