Gene detail

Detail information of GWHGAAZE026677

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091470.1	1.1805E-175	PREDICTED: very-long-chain enoyl-CoA reductase [Sesamum indicum]
Swissprot	tr\|Q9M2U2\|ECR_ARATH	1E-169	Very-long-chain enoyl-CoA reductase
trEMBL	tr\|Q3IAA0\|Q3IAA0_NICBE	9E-176	TSC13 protein {ECO:0000313\|EMBL:AAY17262.1}
TAIR10	AT3G55360.1	3E-135	3-oxo-5-alpha-steroid 4-dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8504598	8507629	-
GWHAAZE00000008	mRNA	8504598	8507629	-
GWHAAZE00000008	exon	8504598	8504666	-
GWHAAZE00000008	exon	8505089	8505872	-
GWHAAZE00000008	exon	8506373	8506445	-
GWHAAZE00000008	exon	8507602	8507629	-
GWHAAZE00000008	CDS	8507602	8507629	-
GWHAAZE00000008	CDS	8506373	8506445	-
GWHAAZE00000008	CDS	8505089	8505872	-
GWHAAZE00000008	CDS	8504598	8504666	-

Transcript Sequence
>GWHTAAZE026711 ATGAAGGTGACTGTAATTTCCCGCAGTGTGTGTTGTTGTATTTGTACTGGATGGCAGGCTACCGTAGCTGATTTGCAGGAAGCAATTTATAAGCGAAGTAATAACCATGTATATACGCCTGATATACCAACAGCCAAGAAATACTATCCTTCTAGACAGCGGCTAACACTCCCCCTCCAATCGGGTTCACAAGAGAAGCCAACCGTCCTTCAATCCAAGAAAAGTCTCAAAGAGTACACTAATGGAAGCTCGAAACATTTAACCGTCCTGTTCAAGGACTTGGGCCCACAAGTATCTTACAGCACCCTCTTCTTTTTTGAGTACGTGGGCCCTCTCTTCATCTACCCCATGTTCTACTACTTTCCTGTGTACCGCCTCTTCGGCTACAAAGGTGAACGGTCCATTCACCCGGTACAAACATTTGCCATGTACTACTGGTGCTTTCACTACTTCAAGCGCATAATGGAAACTTTCTTCGTGCACCGTTTTAGCCACGCCACGTCACCGCTCTCAAACGTGTACCGAAACTGCCTGTACTATTGGACTTTTGGCGCGGTTATTGCTTACTACGTAAACCACCCGCTTTACACGCCTGTGAGTGACCTACAAATGACGATTGGGTTCGGGCTCGGTTTGGTTTGTCAAATGGCAAACTTTTATTGCCATATCTTGCTGAGGAACCTACGGGGTTCTGGGACTGGAGGGTACCAGATCCCAACCGGGTTTTTGTTCAATTTTGTGACTTGTGCAAATTACACAACGGAGATTTATCAGTGGCTGGGGTTCAATATCGCGACTCAGACTGTTCCGGGTTATCTATTTCTTGTGGTTGCTGCTGGTATTATGTCTAACTGGGCTCTTGCTAAGCACCGCCGCCTCCAGAAGTTATTTGACGGGAAGGATGGAAAACCAAGGTACCCACAACGATCGGTGATATTACCCCCATTCCTGTAA

Network for GWHGAAZE026677

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02544.17	Steroid_dh	167	316	1.50E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10258	TER, TSC13, CER10	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid elongation	map00062
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.843
	SRR3591706	second leaf	12.794
	SRR3591707	mature leaf	4.433
	SRR3591708	Shoot apex	75.391
	SRR3591709	Stem	8.026
	SRR3591710	White floral bud	16.685
	SRR3591711	White flower	3.877
	SRR3591712	Green floral bud	18.233
	SRR3591713	Yellow flower	2.073
SRP173429	SRR8316895	Juvenile bud stage	69.129
	SRR8316896	Juvenile bud stage	74.483
	SRR8316897	Juvenile bud stage	33.701
	SRR8316894	Third green stage	16.876
	SRR8316900	Third green stage	36.629
	SRR8316901	Third green stage	40.568
	SRR8316898	Complete white stage	5.210
	SRR8316899	Complete white stage	35.045
	SRR8316903	Complete white stage	10.382
	SRR8316902	Silver flowering stage	5.775
	SRR8316904	Silver flowering stage	5.898
	SRR8316905	Silver flowering stage	1.636
	SRR8316906	Gold flowering stage	3.246
	SRR8316907	Gold flowering stage	7.273
	SRR8316908	Gold flowering stage	3.570
SRP132670	SRR6706286	Control	16.704
	SRR6706287	Light intensity 50%	18.821
	SRR6706288	Light intensity 20%	18.202
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	176.986
	CNS0095593	Slightly white alabastrum(diploid) 2	123.402
	CNS0095594	Slightly white alabastrum(diploid) 3	95.441
	CNS0095595	Whole white alabastrum(diploid) 2	83.656
	CNS0095596	Whole white alabastrum(diploid) 3	70.034
	CNS0095597	Whole white alabastrum(diploid) 4	59.847
	CNS0095598	Silvery flower (diploied) 1	27.082
	CNS0095599	Silvery flower (diploied) 2	54.109
	CNS0095600	Silvery flower (diploied) 3	26.651
	CNS0095601	Golden flower (diploid) 1	5.427
	CNS0095602	Golden flower (diploid) 2	7.716
	CNS0095603	Golden flower (diploid) 3	6.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	117.650
	CNS0095605	Slightly white alabastrum(tetraploid) 2	120.535
	CNS0095606	Slightly white alabastrum(tetraploid) 3	165.885
	CNS0095607	Whole white alabastrum(tetraploid) 1	85.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	150.329
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.894
	CNS0095610	Silvery flower (tetraploid) 1	15.772
	CNS0095611	Silvery flower (tetraploid) 2	18.061
	CNS0095612	Silvery flower (tetraploid) 3	21.420
	CNS0095613	Golden flower (tetraploid) 1	13.017
	CNS0095614	Golden flower (tetraploid) 2	6.064
	CNS0095615	Golden flower (tetraploid) 3	1.502
CRA001975	CRR073297	Stem 1	160.495
	CRR073298	Stem 2	123.915
	CRR073299	Stem 3	78.967
	CRR073300	Leaf 1	53.506
	CRR073301	Leaf 2	79.305
	CRR073302	Leaf 3	39.919
	CRR073303	Juvenile bud 1	38.042
	CRR073304	Juvenile bud 2	6.374
	CRR073305	Juvenile bud 3	39.464
	CRR073306	Third green 1	13.876
	CRR073307	Third green 2	12.223
	CRR073308	Third green 3	11.909
	CRR073309	Second white 1	2.424
	CRR073310	Second white 2	0.857
	CRR073311	Second white 3	1.269
	CRR073312	Silver flowering 1	0.360
	CRR073313	Silver flowering 2	0.622
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.048
	CRR073316	Gold flowering 2	0.139
	CRR073317	Gold flowering 3	1.399
	CRR073318	Tawny withering 1	0.231
	CRR073319	Tawny withering 2	2.809
	CRR073320	Tawny withering 3	0.150