Detail information of GWHGAAZE026684


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283841.11.6297E-103PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
Swissprottr|B9HTK2|CSPLI_POPTR1E-93CASP-like protein 4C2
trEMBLtr|A0A067FJW8|A0A067FJW8_CITSI9E-104CASP-like protein {ECO:0000256|RuleBase:RU361233}
TAIR10AT3G55390.12E-59Uncharacterised protein family (UPF0497)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene85662558568399+
GWHAAZE00000008mRNA85662558568399+
GWHAAZE00000008exon85662558566475+
GWHAAZE00000008exon85669878567122+
GWHAAZE00000008exon85681788568399+
GWHAAZE00000008CDS85662558566475+
GWHAAZE00000008CDS85669878567122+
GWHAAZE00000008CDS85681788568399+
Transcript Sequence

Network for GWHGAAZE026684

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0147


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04535.13DUF588331685.30E-31
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf96.414
SRR3591706second leaf6.261
SRR3591707mature leaf2.405
SRR3591708Shoot apex37.920
SRR3591709Stem61.257
SRR3591710White floral bud14.453
SRR3591711White flower10.703
SRR3591712Green floral bud19.123
SRR3591713Yellow flower2.950
SRP173429 SRR8316895Juvenile bud stage 39.310
SRR8316896Juvenile bud stage 44.470
SRR8316897Juvenile bud stage 39.146
SRR8316894Third green stage 5.854
SRR8316900Third green stage 17.700
SRR8316901Third green stage 26.994
SRR8316898Complete white stage 1.837
SRR8316899Complete white stage 38.034
SRR8316903Complete white stage 2.630
SRR8316902Silver flowering stage1.213
SRR8316904Silver flowering stage0.475
SRR8316905Silver flowering stage0.382
SRR8316906Gold flowering stage 0.728
SRR8316907Gold flowering stage 0.814
SRR8316908Gold flowering stage 1.934
SRP132670SRR6706286Control13.877
SRR6706287Light intensity 50%16.208
SRR6706288Light intensity 20%17.532
CNP0000432CNS0095592Slightly white alabastrum(diploid) 175.305
CNS0095593Slightly white alabastrum(diploid) 286.651
CNS0095594Slightly white alabastrum(diploid) 377.353
CNS0095595Whole white alabastrum(diploid) 249.519
CNS0095596Whole white alabastrum(diploid) 314.804
CNS0095597Whole white alabastrum(diploid) 439.363
CNS0095598Silvery flower (diploied) 1120.221
CNS0095599Silvery flower (diploied) 270.114
CNS0095600Silvery flower (diploied) 319.172
CNS0095601Golden flower (diploid) 166.161
CNS0095602Golden flower (diploid) 233.530
CNS0095603Golden flower (diploid) 331.055
CNS0095604Slightly white alabastrum(tetraploid) 19.926
CNS0095605Slightly white alabastrum(tetraploid) 210.046
CNS0095606Slightly white alabastrum(tetraploid) 313.733
CNS0095607Whole white alabastrum(tetraploid) 16.820
CNS0095608Whole white alabastrum(tetraploid) 24.922
CNS0095609Whole white alabastrum(tetraploid) 35.975
CNS0095610Silvery flower (tetraploid) 11.387
CNS0095611Silvery flower (tetraploid) 22.593
CNS0095612Silvery flower (tetraploid) 33.785
CNS0095613Golden flower (tetraploid) 11.033
CNS0095614Golden flower (tetraploid) 21.526
CNS0095615Golden flower (tetraploid) 30.795
CRA001975CRR073297Stem 123.162
CRR073298Stem 226.240
CRR073299Stem 326.604
CRR073300Leaf 137.862
CRR073301Leaf 266.716
CRR073302Leaf 333.174
CRR073303Juvenile bud 132.187
CRR073304Juvenile bud 213.131
CRR073305Juvenile bud 356.970
CRR073306Third green 12.789
CRR073307Third green 25.812
CRR073308Third green 34.557
CRR073309Second white 11.515
CRR073310Second white 22.188
CRR073311Second white 30.338
CRR073312Silver flowering 12.211
CRR073313Silver flowering 22.395
CRR073314Silver flowering 32.550
CRR073315Gold flowering 13.337
CRR073316Gold flowering 23.687
CRR073317Gold flowering 36.525
CRR073318Tawny withering 154.436
CRR073319Tawny withering 257.363
CRR073320Tawny withering 383.579