Gene detail

Detail information of GWHGAAZE026702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804265.1	0	PREDICTED: ABC transporter B family member 6 isoform X1 [Nicotiana sylvestris]
COG	YP_005367043.1	9E-79	efflux ABC transporter permease/ATP-binding protein
Swissprot	tr\|Q9M3B9\|AB20B_ARATH	0	ABC transporter B family member 20
trEMBL	tr\|A0A097P9R0\|A0A097P9R0_HEVBR	0	ABC transporter family protein {ECO:0000313\|EMBL:AIU41632.1}
TAIR10	AT3G55320.1	0	P-glycoprotein 20

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8892727	8904986	-
GWHAAZE00000008	mRNA	8892727	8904986	-
GWHAAZE00000008	exon	8892727	8892989	-
GWHAAZE00000008	exon	8893070	8893955	-
GWHAAZE00000008	exon	8895060	8895301	-
GWHAAZE00000008	exon	8895608	8896392	-
GWHAAZE00000008	exon	8897575	8897907	-
GWHAAZE00000008	exon	8898261	8898381	-
GWHAAZE00000008	exon	8899787	8900097	-
GWHAAZE00000008	exon	8900184	8900443	-
GWHAAZE00000008	exon	8900859	8901059	-
GWHAAZE00000008	exon	8901365	8901570	-
GWHAAZE00000008	exon	8901659	8901713	-
GWHAAZE00000008	exon	8904615	8904986	-
GWHAAZE00000008	CDS	8904615	8904986	-
GWHAAZE00000008	CDS	8901659	8901713	-
GWHAAZE00000008	CDS	8901365	8901570	-
GWHAAZE00000008	CDS	8900859	8901059	-
GWHAAZE00000008	CDS	8900184	8900443	-
GWHAAZE00000008	CDS	8899787	8900097	-
GWHAAZE00000008	CDS	8898261	8898381	-
GWHAAZE00000008	CDS	8897575	8897907	-
GWHAAZE00000008	CDS	8895608	8896392	-
GWHAAZE00000008	CDS	8895060	8895301	-
GWHAAZE00000008	CDS	8893070	8893955	-
GWHAAZE00000008	CDS	8892727	8892989	-

Transcript Sequence
>GWHTAAZE026736 ATGATGGTATCGAGGGGGTTGTTCGGGTGGTCCCCGCCGCATATGCAGCCGCTGACGCCTGTGTCGGAGGTGTCGGAGCCGCCGGAATCTCCGTCGCCGTACCTAGATACCAGCACCGACGCGGCTCCGATGGAGGTGGAGGAGGAAATGGAGGAGGCTGAAGAAATGGAGCCGCCGCCTGCGGCGGTGCCGTTCTCGAGGCTGTTTGCCTGCGCCGACCGGCTCGATTGGGTGCTCATGGTGGTCGGATCGTTTGCGGCGGCTGCTCACGGGACTGCTCTGGTTGTGTACTTGCATTACTTCGCGAAGATTGTTCAGTTGTTGAGGCATGAAAGTGAAGCTCCTGATGTGCTTTTTGAGAAGTTTACCGAGCTTGCTTTGACCCTTGTTCACATAGCTGTGGCTGTTTTTGCTGCTGGATGGATTGCAATCAATACTAACTATTTTTGTGTAATAGAGGTATCATGTTGGATTCTTACTGGAGAACGGCAAACTGCTGTGATTAGGTCAAGATATGTTCAAGTGTTACTCAATCAAGACATGAGTTTTTTTGACACGTACGGAAACAACGGAGACATTGTGAGCCAAGTATTGAGCGATGTGCTACTTATCCAGTCCGCTCTTAGTGAAAAAGTTGGTAATTATATTCATAACATGGCTACGTTCTTCAGTGGTCTTGTGATTGGATTTGTCAACTGTTGGCAGATTGCCCTTATTACGTTAGCTACTGGTCCGTTTATTGTTGCTGCAGGAGGAATATCAAATATATTTCTCCATAAACTTGCTGAGAATATTCAAGATGCATACGCTGAAGCAGCAAGCATAGCTGAACAGGCTATCTCTTACATTAGAACCTTGTATGCATTTACAAATGAAACATTGGCAAAATATTCTTATGCAACTTCACTACAAGCTACGCTAAGATATGGTATATTGATAAGTCTTGTGCAAGGGCTTGGACTTGGTTTTACATATGGGCTTGCAATTTGTTCTTGTGCCTTACAACTTTGGGTCGGAAGGTTCTTGGTTAGACATGGGAAAGCTCATGGTGGTGAAATTGTAACAGCCCTATTTGCTGTTATTTTAAGTGGCCTCGGACTGAATCAAGCGGCAACAAACTTCTATTCGTTTGAGCAAGGAAGAATTGCTGCTTATAGACTTTTTGAGATGATCAGTCGTTCATCCTCCACTGTTAATCATGACGGAAATACCCTTACTTCTGTGCAAGGAAATATTGAGTTTCGAAATGTATATTTCAGCTATTTGTCTCGTCCTGAAATTCCTATCTTAAGCGGGTTTTACCTCACAGTTCCTGCTAAAAAAACTGTGGCACTTGTAGGCAGAAATGGCTCTGGTAAAAGCAGTATCATACCGCTTATGGAAAGGTTTTATGATCCTACATTAGGAGAAGTCCTTTTGGATGGAGAGAATATTAAGAATCTAAAACTGGAATGGCTGAGAAGCCAAATTGGTTTAGTCACCCAAGAACCTGCGTTGCTGAGTCTGAGTATTAGAGATAACATTGCGGCTGGCTTAGCGTTGACCGAAGAACAGAAGATAAAACTCTCTATTGCTAGGGCGGTGCTTTCAAATCCATCTATTCTTCTTCTCGATGAGGTCACTGGTGGTCTTGATTTTGAAGCTGAGAGATCTGTTCAGGAGGCTCTAGATCTTCTAATGTTAGGCCGATCAACTATAATAATAGCTCGACGGCTTAGTCTGATTAGAAATGCTGATTACATAGCTGTGATGGAGGAAGGTCAGCTAGTCGAAATGGGCACTCATGATGAACTAATAACCCTAGATGGCCTATATGCGGAGCTTCTAAAATGTGAAGAAGCTGCAAAACTTCCAAGGAGGATGCCAATGAGAAACTATAAGGAGACTGCAGCTTTCCAAATTGAAAAGGATTCTTCAGCAAGTCACAGCTTCCAAGAACCATCGTCACCCAAGATGGCTAAATCACCATCTCTTCAGAGAGGCCTCCATGGGTTCCGGGCTCCAGATACTACCTTCAATTCACATGACTCGCCTAGGATTCCGAGCCCTCCGCCTGAGCAAATGGTTGAAAATGGTGGGTCCATCGATCCAACTGACAAGGAGCCGTCAATAAGAAGACAAGATAGTTTCGAGATGAGATTGCCAGAGCTACCCAAGATTGATGTTCAATCTGCACATCACCCAACATCCAATGCGTCCGATCCCGAATCCCCTGTTTCACCACTCTTAACATCTGATCCCAAAAACGAGCGTTCCCATTCTCAAACTTTTAGTCGACCACATAGCGAATTTGATGACATAGCGATTAAAACAAAAGAACCGAAGGATACACAGCACCGAAAAGAACCTCCATTTTGGAGGCTTGTAGAGCTTAGTTTGGCGGAATGGCTTTATGCCGTTTTAGGAAGTACTGGTGCTGCCATCTTTGGTTCTTTTAATCCTCTTCTTGCTTACGTTATTGCACTGATAGTGACGGCGTATTATAGAAATGATAAACATAACTTACGGCAGGAAGTAGACAAGTGGTGCTTACTCATTGCCTGCATGGGCGTAGTCACTGTCGTTGCCAATTTTTTGCAGCACTTTTACTTTGGTATAATGGGAGAGAAAATGACCGAACGAGTTAGAAGAATGATGTTTTCAGCAATGCTTCGCAATGAAGTTGGATGGTTTGATGAAGAGGAGAACAGTGCTGACACCTTATCCATGCGTTTGGCAAATGATGCTACATTTGTGAGAGCTGCTTTTAGCAACCGGCTTTCTATATTTATACAAGATAGTGCGGCCGTTGTCGTGGCAGTTCTTATAGGGATGCTGCTACAGTGGCGATTGGCACTTGTGGCTTTGGCTACACTCCCTATTCTTACTCTTTCGGCCATTGCACAGAAATTGTGGCTTGCGGGTTTCTCGAAAGGCATACAAGAGATGCACAGGAAGGCATCTTTGGTCCTTGAGGATGCTGTTCGAAATATTTACTCCGTCGTAGCATTTTGTGCTGGTGACAAGGTAATGGAGCTTTACAGGTTGCAACTACTGAAGATATTTAAGCAGAGCTTCTTACACGGAATGGCAATCGGTTTTGCCTTTGGCTTCTCACAGTTTCTCCTTTTTGCCTGCAATGCTCTTCTTCTATGGTACACTGCAATCTCCGTTAAAAACAAATATATGGATTTGCCAACAGCTATCAAAGAGTACATGGTGTTCTCTTTTGCCACATTTGCACTTGTGGAGCCTTTTGGCTTGGCTCCTTACATACTCAAAAGAAGGAAATCTCTAATATCCGTATTTGAAATTATCGACCGAGTTCCAAAGATTGAACCCGATGATAATTTAGCTATGAAACCTCCTAATGTTTATGGAAGCATCGAGTTGAAAAACGTCGATTTTTCTTACCCAACTCGGCCCGAAGTGTTGGTACTGAGCAATTTCACTCTCAAAGTCAACGGTGGTCAAACCGTTGCTGTAGTGGGAGTTTCTGGGTCGGGAAAGAGCACTATAATTTCTCTGATAGAGAGGTTTTACGATCCAGTTGCAGGTCAGGTTTCGTTGGATGGCCGAGATTTGAAGGTATATAACTTGAGATGGTTAAGGAACCATCTGGGTGTTGTTCAGCAAGAACCGATTATCTTCTCAACAACCATAAGGGAAAATATTATATATGCCAGGCACAATGCCACTGAAGCGGAGATCAAAGAGGCAGCAAGAATTGCAAATGCTCACCATTTCATTAGCAGCTTGCCCCACGGTTATGACACGCACGTGGGAATGAGGGACGAGGCGAGCTCGTCGATCGAGTCTGAGTCGAGCCGTGTAGTCCAAGAGGCTCTTGATACGTTGGTCATGGGGAACAAAACAACCATCTTGATAGCTCATAGAGCAGCCATGATGAAGCATGTTGATAATATTGTTGTACTTAATGGAGGGAGAATCGTGGAGGACGGGACCCATAATACTTTGATGGCGAAGAATGGATTGTATGTGCGTTTGATGCAACCTCACTTTGGGAAGGGCTTGCGTCAGCATCGGCTTATTTAG

Network for GWHGAAZE026702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	82	362	2.80E-39
PF00005.28	ABC_tran	433	507	7.10E-15
PF00664.24	ABC_membrane	808	1067	5.50E-40
PF00005.28	ABC_tran	1140	1291	2.40E-19

Protein Sequence

>GWHPAAZE026720
MMVSRGLFGWSPPHMQPLTPVSEVSEPPESPSPYLDTSTDAAPMEVEEEMEEAEEMEPPPAAVPFSRLFACADRLDWVLMVVGSFAAAAHGTALVVYLHYFAKIVQLLRHESEAPDVLFEKFTELALTLVHIAVAVFAAGWIAINTNYFCVIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFVNCWQIALITLATGPFIVAAGGISNIFLHKLAENIQDAYAEAASIAEQAISYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVRHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFEQGRIAAYRLFEMISRSSSTVNHDGNTLTSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAAGLALTEEQKIKLSIARAVLSNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELITLDGLYAELLKCEEAAKLPRRMPMRNYKETAAFQIEKDSSASHSFQEPSSPKMAKSPSLQRGLHGFRAPDTTFNSHDSPRIPSPPPEQMVENGGSIDPTDKEPSIRRQDSFEMRLPELPKIDVQSAHHPTSNASDPESPVSPLLTSDPKNERSHSQTFSRPHSEFDDIAIKTKEPKDTQHRKEPPFWRLVELSLAEWLYAVLGSTGAAIFGSFNPLLAYVIALIVTAYYRNDKHNLRQEVDKWCLLIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVVVAVLIGMLLQWRLALVALATLPILTLSAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYSVVAFCAGDKVMELYRLQLLKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAISVKNKYMDLPTAIKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIEPDDNLAMKPPNVYGSIELKNVDFSYPTRPEVLVLSNFTLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVSLDGRDLKVYNLRWLRNHLGVVQQEPIIFSTTIRENIIYARHNATEAEIKEAARIANAHHFISSLPHGYDTHVGMRDEASSSIESESSRVVQEALDTLVMGNKTTILIAHRAAMMKHVDNIVVLNGGRIVEDGTHNTLMAKNGLYVRLMQPHFGKGLRQHRLI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.327
	SRR3591706	second leaf	9.916
	SRR3591707	mature leaf	12.525
	SRR3591708	Shoot apex	13.492
	SRR3591709	Stem	16.241
	SRR3591710	White floral bud	17.246
	SRR3591711	White flower	19.776
	SRR3591712	Green floral bud	12.748
	SRR3591713	Yellow flower	15.321
SRP173429	SRR8316895	Juvenile bud stage	7.662
	SRR8316896	Juvenile bud stage	10.775
	SRR8316897	Juvenile bud stage	4.752
	SRR8316894	Third green stage	4.761
	SRR8316900	Third green stage	9.809
	SRR8316901	Third green stage	11.321
	SRR8316898	Complete white stage	4.669
	SRR8316899	Complete white stage	18.105
	SRR8316903	Complete white stage	10.910
	SRR8316902	Silver flowering stage	7.894
	SRR8316904	Silver flowering stage	9.745
	SRR8316905	Silver flowering stage	5.278
	SRR8316906	Gold flowering stage	16.664
	SRR8316907	Gold flowering stage	13.851
	SRR8316908	Gold flowering stage	15.892
SRP132670	SRR6706286	Control	10.141
	SRR6706287	Light intensity 50%	11.442
	SRR6706288	Light intensity 20%	11.340
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.213
	CNS0095593	Slightly white alabastrum(diploid) 2	5.003
	CNS0095594	Slightly white alabastrum(diploid) 3	4.214
	CNS0095595	Whole white alabastrum(diploid) 2	4.180
	CNS0095596	Whole white alabastrum(diploid) 3	3.056
	CNS0095597	Whole white alabastrum(diploid) 4	4.055
	CNS0095598	Silvery flower (diploied) 1	10.122
	CNS0095599	Silvery flower (diploied) 2	7.134
	CNS0095600	Silvery flower (diploied) 3	16.267
	CNS0095601	Golden flower (diploid) 1	6.628
	CNS0095602	Golden flower (diploid) 2	19.779
	CNS0095603	Golden flower (diploid) 3	17.531
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.149
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.107
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.454
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.540
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.159
	CNS0095610	Silvery flower (tetraploid) 1	11.851
	CNS0095611	Silvery flower (tetraploid) 2	11.311
	CNS0095612	Silvery flower (tetraploid) 3	14.817
	CNS0095613	Golden flower (tetraploid) 1	6.519
	CNS0095614	Golden flower (tetraploid) 2	10.705
	CNS0095615	Golden flower (tetraploid) 3	20.476
CRA001975	CRR073297	Stem 1	17.445
	CRR073298	Stem 2	14.144
	CRR073299	Stem 3	12.566
	CRR073300	Leaf 1	16.436
	CRR073301	Leaf 2	13.921
	CRR073302	Leaf 3	10.610
	CRR073303	Juvenile bud 1	10.595
	CRR073304	Juvenile bud 2	8.987
	CRR073305	Juvenile bud 3	19.765
	CRR073306	Third green 1	10.701
	CRR073307	Third green 2	8.378
	CRR073308	Third green 3	11.461
	CRR073309	Second white 1	6.872
	CRR073310	Second white 2	11.316
	CRR073311	Second white 3	13.652
	CRR073312	Silver flowering 1	13.407
	CRR073313	Silver flowering 2	9.517
	CRR073314	Silver flowering 3	10.694
	CRR073315	Gold flowering 1	6.983
	CRR073316	Gold flowering 2	13.052
	CRR073317	Gold flowering 3	8.454
	CRR073318	Tawny withering 1	15.411
	CRR073319	Tawny withering 2	14.237
	CRR073320	Tawny withering 3	17.271