Gene detail

Detail information of GWHGAAZE026737

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619577.1	1.2753E-107	PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Nicotiana tomentosiformis]
COG	YP_004918718.1	2E-44	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Swissprot	tr\|Q9M2W3\|PGPS2_ARATH	5E-100	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2
trEMBL	tr\|A0A068U829\|A0A068U829_COFCA	5E-108	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04339.1}
TAIR10	AT2G39290.1	1E-73	phosphatidylglycerolphosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9342234	9345332	-
GWHAAZE00000008	mRNA	9342234	9345332	-
GWHAAZE00000008	exon	9344987	9345332	-
GWHAAZE00000008	exon	9343782	9343879	-
GWHAAZE00000008	exon	9343626	9343676	-
GWHAAZE00000008	exon	9343426	9343539	-
GWHAAZE00000008	exon	9342967	9343023	-
GWHAAZE00000008	exon	9342791	9342876	-
GWHAAZE00000008	exon	9342234	9342661	-
GWHAAZE00000008	CDS	9344987	9345332	-
GWHAAZE00000008	CDS	9343782	9343879	-
GWHAAZE00000008	CDS	9343626	9343676	-
GWHAAZE00000008	CDS	9343426	9343539	-
GWHAAZE00000008	CDS	9342967	9343023	-
GWHAAZE00000008	CDS	9342791	9342876	-
GWHAAZE00000008	CDS	9342541	9342661	-
GWHAAZE00000008	three_prime_UTR	9342234	9342540	-

Transcript Sequence
>GWHTAAZE026771 ATGCCAACGCTCAAACTAACCACCATAGCTTCCCTCTCCGCCCGGCCCCAAAACCTCCATGAATGGCCTCGCACAACAACCTCCGCCACCACTACCTCAGGCGGCACACCGGAAGCTCCGATGATCTCCTGCCGGGGCTGGAGGATAACATCGTGCGCACCACCCGCGCACGATAATACCACACCTAGGAAATTAGGGTTCCGCCGAGACAAATGCTTTAGCTACTCCGAGTACAGAGGAGGAGAATCACCACAACCGTCAGAGCAGCAACAGTCCTCTAAATTCCTCACGTTGCCGACGGTATTGACAATCGGCCGTGTTGCTGCTGTTCCTCTTCTCGTTAGCACTTTTTATGTGAATAGTAGCTGGGGTGGAAATGCTGCTACAAGTATCTTCATTGCTGCATCAATTACAGATTGGCTTGATGGGTACATTGCTCGAGAGATGAATTTAGGAAGTGCATTTGGTGCATTTTTAGATCCAGTTGCTGATAAGCTTATGGTTGCGGCTACCTTGGTCTTGTTGTGTACAAGACCTCCAGAATTTGGAATGTTTGTTCAACTACCGTGGCTACTGACTGTACCCTCAATTGCCATAATCGGTAGAGAGATAACTATGTCTGCCGTTAGAGAATGGGCTGCTTCTCAGAACGGTGAACTTTCAGAGGCTGTTGCTGTGAATAATTTAGGAAAGTGGAAAACAGCCACGCAAATGACTGCGCTAACCATCCTCCTGGCAACCAGAAACAGCAGTCTTACAGGATCAGGGGTTCTTGCAACTTCTGGTGTTGCTTTGCTTTATATCTCAGCATGGCTAGCTTTATGGTCATTATTTGTGTATATGCAGAAAATATGGAATGTTTTGCTCTCATAGACTTCATAGAATACTTCAGCCTTCTTCCGCTTTACTACGTGGGGCTGTGGCTATTACAACTCGAGCAATATTGAGAGTATTGCTCATGTGCACTATTTTGTCAAATGAATGTCACATATAAACCGGAAGGCTGTTTTTTCATACAAGTGGATAATGTTAGTTCTTCAAATCTAGGGATTTGTGCGGTTGACTCGAATGATCAGTTTTCACTTGCTTTTTGTTGTTGCAATGTCTTATCATTGTTCATACGTATGGATTTTGCCTGTTTCGTTGGCTTGTTGAAATCGTATATGTCAATATTATAGCA

Network for GWHGAAZE026737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01066.22	CDP-OH_P_transf	98	164	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00995	pgsA, PGS1	Metabolic pathways	map01100
K00995	pgsA, PGS1	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0016021	cellular_component	integral component of membrane
GO:0016020	cellular_component	membrane
GO:0008444	molecular_function	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0016780	molecular_function	phosphotransferase activity, for other substituted phosphate groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.480
	SRR3591706	second leaf	8.692
	SRR3591707	mature leaf	11.564
	SRR3591708	Shoot apex	11.409
	SRR3591709	Stem	14.430
	SRR3591710	White floral bud	8.185
	SRR3591711	White flower	11.589
	SRR3591712	Green floral bud	10.707
	SRR3591713	Yellow flower	9.184
SRP173429	SRR8316895	Juvenile bud stage	10.344
	SRR8316896	Juvenile bud stage	12.455
	SRR8316897	Juvenile bud stage	4.370
	SRR8316894	Third green stage	6.086
	SRR8316900	Third green stage	17.495
	SRR8316901	Third green stage	14.515
	SRR8316898	Complete white stage	6.759
	SRR8316899	Complete white stage	22.261
	SRR8316903	Complete white stage	9.527
	SRR8316902	Silver flowering stage	8.072
	SRR8316904	Silver flowering stage	10.307
	SRR8316905	Silver flowering stage	5.289
	SRR8316906	Gold flowering stage	18.604
	SRR8316907	Gold flowering stage	18.959
	SRR8316908	Gold flowering stage	17.251
SRP132670	SRR6706286	Control	14.788
	SRR6706287	Light intensity 50%	15.014
	SRR6706288	Light intensity 20%	17.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.829
	CNS0095593	Slightly white alabastrum(diploid) 2	12.964
	CNS0095594	Slightly white alabastrum(diploid) 3	10.249
	CNS0095595	Whole white alabastrum(diploid) 2	11.711
	CNS0095596	Whole white alabastrum(diploid) 3	9.106
	CNS0095597	Whole white alabastrum(diploid) 4	9.166
	CNS0095598	Silvery flower (diploied) 1	12.080
	CNS0095599	Silvery flower (diploied) 2	13.879
	CNS0095600	Silvery flower (diploied) 3	17.061
	CNS0095601	Golden flower (diploid) 1	13.469
	CNS0095602	Golden flower (diploid) 2	13.834
	CNS0095603	Golden flower (diploid) 3	15.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.853
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.144
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.472
	CNS0095610	Silvery flower (tetraploid) 1	10.637
	CNS0095611	Silvery flower (tetraploid) 2	11.457
	CNS0095612	Silvery flower (tetraploid) 3	8.582
	CNS0095613	Golden flower (tetraploid) 1	7.974
	CNS0095614	Golden flower (tetraploid) 2	9.173
	CNS0095615	Golden flower (tetraploid) 3	10.942
CRA001975	CRR073297	Stem 1	11.317
	CRR073298	Stem 2	11.000
	CRR073299	Stem 3	12.134
	CRR073300	Leaf 1	13.020
	CRR073301	Leaf 2	10.694
	CRR073302	Leaf 3	12.982
	CRR073303	Juvenile bud 1	13.756
	CRR073304	Juvenile bud 2	8.042
	CRR073305	Juvenile bud 3	13.325
	CRR073306	Third green 1	6.308
	CRR073307	Third green 2	6.689
	CRR073308	Third green 3	4.574
	CRR073309	Second white 1	12.707
	CRR073310	Second white 2	9.592
	CRR073311	Second white 3	9.445
	CRR073312	Silver flowering 1	7.398
	CRR073313	Silver flowering 2	13.316
	CRR073314	Silver flowering 3	6.906
	CRR073315	Gold flowering 1	12.405
	CRR073316	Gold flowering 2	14.442
	CRR073317	Gold flowering 3	13.117
	CRR073318	Tawny withering 1	12.958
	CRR073319	Tawny withering 2	11.614
	CRR073320	Tawny withering 3	12.888