Gene detail

Detail information of GWHGAAZE026739

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007009661.1	5.4017E-142	Kinase superfamily protein [Theobroma cacao]
COG	YP_007116828.1	4E-16	serine/threonine protein kinase
Swissprot	tr\|Q0WRY5\|CDL1_ARATH	5E-128	Serine/threonine-protein kinase CDL1 {ECO:0000305}
trEMBL	tr\|A0A061FN09\|A0A061FN09_THECC	2E-142	Kinase superfamily protein {ECO:0000313\|EMBL:EOY18471.1}
TAIR10	AT5G02800.1	4E-102	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9352639	9357162	-
GWHAAZE00000008	mRNA	9352639	9357162	-
GWHAAZE00000008	exon	9357072	9357162	-
GWHAAZE00000008	exon	9355138	9355293	-
GWHAAZE00000008	exon	9353558	9353949	-
GWHAAZE00000008	exon	9352639	9352902	-
GWHAAZE00000008	CDS	9357072	9357162	-
GWHAAZE00000008	CDS	9355138	9355293	-
GWHAAZE00000008	CDS	9353558	9353949	-
GWHAAZE00000008	CDS	9352639	9352902	-

Transcript Sequence
>GWHTAAZE026773 ATGGGTTGGTTCCCTTGTTCTGGAAGAACAAAGAAAAAACCTAAAAAGGACCACAATAACAAGCATTTAGATCAGATCTCATCAACTCCAGAAAAATCAAAGGGGAATTATTCACTTGATGTAAAGAAGGAAACTTCTAAAGATGGAGGATCTGAACATATACCGGCACACACATTCACATTTAGGGAATTGGCAACTGCAACCAAGAATTTTAGAGCTGATTGTCTTTTGGGCGAAGGAGGTTTTGATCTTCCACCTGATAAAAAGCAACTTGACTGGATTACAAGAATGAAAATAGCTGCCGGTGCTGCAAAGGGCTTGGAGTATTTGCATGACAAAGCGAGCCCCCCTGTTATATACCGTGATTTGAAATGCTCAAATATTTTACTTGATGAATGGTACCATCCTAAGCTATCCGATTTTGGCTTGGCTAAATTGGGCCCCGTCGGAGATAAAACACACGTATCCACTAGAGTGATGGGAACATATGGCTATTGTGCACCCGAATATGCAATGACCGGTCAACTTACGTTAAAATCAGATGTTTATAGTTTCGGGGTGGTTCTTCTTGAAATTATTACTGGTAGAAAAGCGATTGACAATTCCAAAGTCACCGGGGAGCAAAATCTGATCGCGTGGGCACGGCCCTTGTTCAAAGACCGGAGGAAGTTCCCGCAGATGGCTGACCCAGTGCTCCAAGGTCAGTATCCAGTGAGGGGCTTATACCAAGCTCTAGCTGTTGCTGCAATGTGTGTTCAAGAGCAACCTAACATGCGGCCTCTTATAGCTGATGTAGTTACAGCCCTTTCTTATCTTGCTTCTCAAAAGTATGACCCTGAGGCCCGGTCAAGCCAAAGCACCCGGTCCGGCTCCTCCACTCCTAGGACCAGAAGGTCGCAGTGA

Network for GWHGAAZE026739

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	95	265	3.50E-25

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.874
	SRR3591706	second leaf	6.930
	SRR3591707	mature leaf	3.536
	SRR3591708	Shoot apex	15.032
	SRR3591709	Stem	13.491
	SRR3591710	White floral bud	10.671
	SRR3591711	White flower	6.589
	SRR3591712	Green floral bud	14.866
	SRR3591713	Yellow flower	4.514
SRP173429	SRR8316895	Juvenile bud stage	8.012
	SRR8316896	Juvenile bud stage	10.129
	SRR8316897	Juvenile bud stage	6.626
	SRR8316894	Third green stage	5.680
	SRR8316900	Third green stage	17.053
	SRR8316901	Third green stage	14.547
	SRR8316898	Complete white stage	5.904
	SRR8316899	Complete white stage	17.922
	SRR8316903	Complete white stage	8.117
	SRR8316902	Silver flowering stage	4.314
	SRR8316904	Silver flowering stage	6.871
	SRR8316905	Silver flowering stage	2.752
	SRR8316906	Gold flowering stage	8.931
	SRR8316907	Gold flowering stage	7.546
	SRR8316908	Gold flowering stage	6.887
SRP132670	SRR6706286	Control	12.712
	SRR6706287	Light intensity 50%	14.364
	SRR6706288	Light intensity 20%	14.433
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.232
	CNS0095593	Slightly white alabastrum(diploid) 2	11.583
	CNS0095594	Slightly white alabastrum(diploid) 3	9.886
	CNS0095595	Whole white alabastrum(diploid) 2	10.192
	CNS0095596	Whole white alabastrum(diploid) 3	9.938
	CNS0095597	Whole white alabastrum(diploid) 4	7.945
	CNS0095598	Silvery flower (diploied) 1	7.366
	CNS0095599	Silvery flower (diploied) 2	8.613
	CNS0095600	Silvery flower (diploied) 3	9.144
	CNS0095601	Golden flower (diploid) 1	9.257
	CNS0095602	Golden flower (diploid) 2	10.122
	CNS0095603	Golden flower (diploid) 3	8.540
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.746
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.583
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.149
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.631
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.509
	CNS0095610	Silvery flower (tetraploid) 1	8.279
	CNS0095611	Silvery flower (tetraploid) 2	7.337
	CNS0095612	Silvery flower (tetraploid) 3	5.826
	CNS0095613	Golden flower (tetraploid) 1	2.805
	CNS0095614	Golden flower (tetraploid) 2	3.593
	CNS0095615	Golden flower (tetraploid) 3	2.261
CRA001975	CRR073297	Stem 1	16.759
	CRR073298	Stem 2	16.823
	CRR073299	Stem 3	15.621
	CRR073300	Leaf 1	19.851
	CRR073301	Leaf 2	22.516
	CRR073302	Leaf 3	15.988
	CRR073303	Juvenile bud 1	19.689
	CRR073304	Juvenile bud 2	14.457
	CRR073305	Juvenile bud 3	18.031
	CRR073306	Third green 1	6.835
	CRR073307	Third green 2	9.012
	CRR073308	Third green 3	6.133
	CRR073309	Second white 1	3.499
	CRR073310	Second white 2	5.091
	CRR073311	Second white 3	2.357
	CRR073312	Silver flowering 1	1.356
	CRR073313	Silver flowering 2	0.728
	CRR073314	Silver flowering 3	0.781
	CRR073315	Gold flowering 1	6.631
	CRR073316	Gold flowering 2	5.133
	CRR073317	Gold flowering 3	4.573
	CRR073318	Tawny withering 1	19.119
	CRR073319	Tawny withering 2	18.774
	CRR073320	Tawny withering 3	19.899