Gene detail

Detail information of GWHGAAZE026753

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588230.1	8.74505E-78	PREDICTED: LOB domain-containing protein 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LQR0\|LBD1_ARATH	1E-63	LOB domain-containing protein 1
trEMBL	tr\|I3T451\|I3T451_LOTJA	2E-75	Uncharacterized protein {ECO:0000313\|EMBL:AFK47293.1}
TAIR10	AT1G07900.1	2E-51	LOB domain-containing protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9589044	9592339	+
GWHAAZE00000008	mRNA	9589044	9592339	+
GWHAAZE00000008	exon	9589044	9589336	+
GWHAAZE00000008	exon	9591993	9592339	+
GWHAAZE00000008	five_prime_UTR	9589044	9589051	+
GWHAAZE00000008	CDS	9589052	9589336	+
GWHAAZE00000008	CDS	9591993	9592319	+
GWHAAZE00000008	three_prime_UTR	9592320	9592339	+

Transcript Sequence
>GWHTAAZE026787 GGAAAAAAATGGAATGCGGTGACAAGACCAAAATTACAGCATCTTCTAATTCCTCACCTAAAGAACAACAATATTATTACTCTTCACAAAGTAGTAGTAGTGGCAGAATTCCAGTTACTCATAAAGTCATCAATAATCTTGTGATCACCCCTTGTGCTGCCTGCAAAATCCTCCGCCGTCGTTGCATACCGGATAAATGCGTGCTCGCCCCCTATTTTCCGCCCACAGAGCCGCTCAAGTTCACCATAGCCCATCGGGTTTTTGGAGCTAGTAACATCATCAAGTTATTGCAGGAACTTCCTGAGTATCAGAGAGCAGATGCAGTAAGCAGTTTAGTTTATGAAGCAAATGCAAGGATAAGAGACCCTATTTATGGCAGTGCTGGAACAATTTGTCATCTCCAGAAACAAATCGGCGATCTCCAAGTCGAATTGGCAAAAGCACAAGCGAAACTTATAAATTTGCATTGCCAACAAACTAATTTAATGGCGTTTATTTGCAAGGAAATGACGACGCAAACTGATCAACAACAACCCATTTCACCACTATCCTTTGACAATGAAAATCTCTTCTTGAATGATACTAGTTTTGATCCAGATTGGGAACCACTTTGGACATGAATAAGTCTTTTAATAACATT

Network for GWHGAAZE026753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03195.15	LOB	48	146	6.00E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LOB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.877
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.415
	SRR3591708	Shoot apex	0.901
	SRR3591709	Stem	4.555
	SRR3591710	White floral bud	0.416
	SRR3591711	White flower	3.499
	SRR3591712	Green floral bud	0.568
	SRR3591713	Yellow flower	0.701
SRP173429	SRR8316895	Juvenile bud stage	2.118
	SRR8316896	Juvenile bud stage	8.744
	SRR8316897	Juvenile bud stage	1.125
	SRR8316894	Third green stage	3.317
	SRR8316900	Third green stage	4.264
	SRR8316901	Third green stage	5.515
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.517
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.453
	SRR8316904	Silver flowering stage	0.668
	SRR8316905	Silver flowering stage	0.652
	SRR8316906	Gold flowering stage	4.886
	SRR8316907	Gold flowering stage	2.666
	SRR8316908	Gold flowering stage	5.158
SRP132670	SRR6706286	Control	6.562
	SRR6706287	Light intensity 50%	3.453
	SRR6706288	Light intensity 20%	4.143
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.511
	CNS0095593	Slightly white alabastrum(diploid) 2	10.448
	CNS0095594	Slightly white alabastrum(diploid) 3	11.480
	CNS0095595	Whole white alabastrum(diploid) 2	3.741
	CNS0095596	Whole white alabastrum(diploid) 3	0.601
	CNS0095597	Whole white alabastrum(diploid) 4	0.804
	CNS0095598	Silvery flower (diploied) 1	4.366
	CNS0095599	Silvery flower (diploied) 2	0.381
	CNS0095600	Silvery flower (diploied) 3	3.062
	CNS0095601	Golden flower (diploid) 1	6.499
	CNS0095602	Golden flower (diploid) 2	3.294
	CNS0095603	Golden flower (diploid) 3	4.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.932
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.411
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.775
	CNS0095610	Silvery flower (tetraploid) 1	0.182
	CNS0095611	Silvery flower (tetraploid) 2	0.277
	CNS0095612	Silvery flower (tetraploid) 3	1.007
	CNS0095613	Golden flower (tetraploid) 1	0.571
	CNS0095614	Golden flower (tetraploid) 2	5.728
	CNS0095615	Golden flower (tetraploid) 3	0.101
CRA001975	CRR073297	Stem 1	2.511
	CRR073298	Stem 2	4.267
	CRR073299	Stem 3	1.099
	CRR073300	Leaf 1	1.102
	CRR073301	Leaf 2	5.859
	CRR073302	Leaf 3	4.749
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.214
	CRR073305	Juvenile bud 3	0.070
	CRR073306	Third green 1	0.414
	CRR073307	Third green 2	0.250
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.147
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.908
	CRR073313	Silver flowering 2	0.404
	CRR073314	Silver flowering 3	0.268
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.289
	CRR073318	Tawny withering 1	0.655
	CRR073319	Tawny withering 2	2.413
	CRR073320	Tawny withering 3	1.461