Detail information of GWHGAAZE026754


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009784336.14.4321E-78PREDICTED: LOB domain-containing protein 1-like [Nicotiana sylvestris]
Swissprottr|Q9LQR0|LBD1_ARATH6E-67LOB domain-containing protein 1
trEMBLtr|M5W070|M5W070_PRUPE3E-77Uncharacterized protein {ECO:0000313|EMBL:EMJ07109.1}
TAIR10AT1G07900.11E-52LOB domain-containing protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene96015369603514+
GWHAAZE00000008mRNA96015369603514+
GWHAAZE00000008exon96015369601823+
GWHAAZE00000008exon96031859603514+
GWHAAZE00000008CDS96015369601823+
GWHAAZE00000008CDS96031859603514+
Transcript Sequence

Network for GWHGAAZE026754

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB491478.20E-39
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.168
SRR3591706second leaf0.000
SRR3591707mature leaf0.188
SRR3591708Shoot apex0.000
SRR3591709Stem1.731
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.110
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.352
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.135
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.218
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.326
SRP132670SRR6706286Control0.088
SRR6706287Light intensity 50%0.083
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.404
CNS0095593Slightly white alabastrum(diploid) 20.109
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.367
CNS0095600Silvery flower (diploied) 30.101
CNS0095601Golden flower (diploid) 10.103
CNS0095602Golden flower (diploid) 20.188
CNS0095603Golden flower (diploid) 30.107
CNS0095604Slightly white alabastrum(tetraploid) 10.110
CNS0095605Slightly white alabastrum(tetraploid) 20.049
CNS0095606Slightly white alabastrum(tetraploid) 30.249
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.009
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.172
CRR073298Stem 20.093
CRR073299Stem 30.443
CRR073300Leaf 10.000
CRR073301Leaf 20.099
CRR073302Leaf 30.318
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.298
CRR073306Third green 10.211
CRR073307Third green 21.482
CRR073308Third green 30.902
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.069
CRR073316Gold flowering 20.056
CRR073317Gold flowering 30.071
CRR073318Tawny withering 12.729
CRR073319Tawny withering 22.374
CRR073320Tawny withering 35.970