Gene detail

Detail information of GWHGAAZE026757

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007009760.1	GTP binding Elongation factor Tu family protein isoform 1 [Theobroma cacao]
COG	YP_004780353.1	translation elongation factor EF-1 subunit alpha
Swissprot	tr\|O64937\|EF1A_ORYSJ	Elongation factor 1-alpha
trEMBL	tr\|A0A061FML3\|A0A061FML3_THECC	Elongation factor 1-alpha {ECO:0000256\|RuleBase:RU004060}
TAIR10	AT5G60390.3	GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9688576	9690028	+
GWHAAZE00000008	mRNA	9688576	9690028	+
GWHAAZE00000008	exon	9688576	9689037	+
GWHAAZE00000008	exon	9689141	9690028	+
GWHAAZE00000008	CDS	9688576	9689037	+
GWHAAZE00000008	CDS	9689141	9690028	+

Transcript Sequence
>GWHTAAZE026791 ATGGGTAAGGAGAAGGTTCACATTAACATTGTTGTTATTGGCCATGTCGATTCTGGCAAATCAACCACCACTGGCCATCTTATCTACAAGCTTGGAGGTATCGACAAGCGTGTGATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTACTGGACAAGCTCAAGGCAGAGCGTGAGCGTGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACCACCAAATACTACTGCACCGTCATTGATGCCCCTGGTCACCGTGACTTTATCAAGAACATGATTACTGGAACTTCCCAGGCTGACTGTGCTGTCCTTATCATCGACTCCACCACTGGAGGCTTTGAAGCGGGTATCTCAAAGGACGGTCAGACCCGTGAGCACGCTTTGCTTGCTTTCACCCTTGGTGTTAGGCAAATGATCTGTTGCTGCAACAAGATGGATGCTACAACTCCGAAATACTCCAAGGCAAGGTATGATGAAATTGTGAAGGAGGTCTCTTCTTATCTTAAAAAGGTGGGATACAACCCAGACAAGATCCCATTTGTTCCCATCTCTGGATTCGAGGGTGATAACATGATCGAGAGGTCAACCAACCTTGACTGGTACAAGGGCCCAACCCTACTTGAGGCCCTCGACCTGATCAATGAGCCGAGAAGGCCCTCGGACAAACCTCTCCGTCTCCCTCTGCAGGACGTCTACAAGATTGGCGGAATTGGAACTGTCCCTGTGGGCCGTGTTGAAACTGGGACCCTCAAGCCTGGTATGGTTGTCACTTTTGGTCCTTCTGGCTTGACCACTGAAGTCAAATCAGTCGAAATGCACCACGAGTCTCTTCCAGAGGCTCTTCCCGGTGACAATGTGGGCTTCAATGTGAAGAACGTTTCTGTTAAGGATCTCAAACGTGGCTACGTCGCCTCTAATTCAAAGGAAGATCCGGCTAAGGAGGCTGCCAACTTTACTTCTCAAGTTATCATCATGAACCACCCAGGTCAGATTGGAAATGGGTACGCCCCGGTCCTCGATTGCCACACTTCCCACATTGCGGTCAAGTTTGCCGAGATTTTGACCAAGATTGACCGTCGATCTGGCAAGGAGCTCGAGAAGGAACCAAAGTTTTTGAAGAACGGTGATGCTGGTATGATCAAGATGGTCCCCACCAAGCCTATGGTTGTCGAGACCTTCGCTGAGTATCCCCCACTAGGTCGATTTGCAGTAAGGGATATGAGGCAGACTGTGGCTGTCGGAGTTATCAAGAATGTGGAGAAGAAGGATCCTACTGGTGCGAAGGTTACTAAAGCTGCTGCTAAGAAGTCTGGGAAGTGA

Network for GWHGAAZE026757

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	7	221	4.60E-53
PF03144.26	GTP_EFTU_D2	248	313	2.70E-14
PF03143.18	GTP_EFTU_D3	322	429	1.60E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03231	EEF1A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0003746	molecular_function	translation elongation factor activity
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.308
	SRR3591706	second leaf	2.733
	SRR3591707	mature leaf	1.185
	SRR3591708	Shoot apex	1.675
	SRR3591709	Stem	6.888
	SRR3591710	White floral bud	8.831
	SRR3591711	White flower	11.018
	SRR3591712	Green floral bud	27.171
	SRR3591713	Yellow flower	12.544
SRP173429	SRR8316895	Juvenile bud stage	40.326
	SRR8316896	Juvenile bud stage	81.418
	SRR8316897	Juvenile bud stage	28.405
	SRR8316894	Third green stage	16.072
	SRR8316900	Third green stage	24.399
	SRR8316901	Third green stage	32.872
	SRR8316898	Complete white stage	2.264
	SRR8316899	Complete white stage	5.052
	SRR8316903	Complete white stage	2.697
	SRR8316902	Silver flowering stage	5.061
	SRR8316904	Silver flowering stage	5.319
	SRR8316905	Silver flowering stage	2.268
	SRR8316906	Gold flowering stage	30.699
	SRR8316907	Gold flowering stage	16.578
	SRR8316908	Gold flowering stage	37.103
SRP132670	SRR6706286	Control	20.393
	SRR6706287	Light intensity 50%	15.818
	SRR6706288	Light intensity 20%	13.993
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.088
	CNS0095593	Slightly white alabastrum(diploid) 2	18.456
	CNS0095594	Slightly white alabastrum(diploid) 3	43.599
	CNS0095595	Whole white alabastrum(diploid) 2	18.312
	CNS0095596	Whole white alabastrum(diploid) 3	23.957
	CNS0095597	Whole white alabastrum(diploid) 4	14.596
	CNS0095598	Silvery flower (diploied) 1	3.903
	CNS0095599	Silvery flower (diploied) 2	6.108
	CNS0095600	Silvery flower (diploied) 3	14.112
	CNS0095601	Golden flower (diploid) 1	9.596
	CNS0095602	Golden flower (diploid) 2	23.377
	CNS0095603	Golden flower (diploid) 3	25.126
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.550
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.355
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.111
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.833
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.326
	CNS0095610	Silvery flower (tetraploid) 1	21.070
	CNS0095611	Silvery flower (tetraploid) 2	32.300
	CNS0095612	Silvery flower (tetraploid) 3	19.040
	CNS0095613	Golden flower (tetraploid) 1	34.255
	CNS0095614	Golden flower (tetraploid) 2	47.533
	CNS0095615	Golden flower (tetraploid) 3	16.820
CRA001975	CRR073297	Stem 1	49.595
	CRR073298	Stem 2	35.776
	CRR073299	Stem 3	52.460
	CRR073300	Leaf 1	18.075
	CRR073301	Leaf 2	20.487
	CRR073302	Leaf 3	18.714
	CRR073303	Juvenile bud 1	13.942
	CRR073304	Juvenile bud 2	14.815
	CRR073305	Juvenile bud 3	17.993
	CRR073306	Third green 1	7.451
	CRR073307	Third green 2	9.817
	CRR073308	Third green 3	6.658
	CRR073309	Second white 1	29.105
	CRR073310	Second white 2	20.509
	CRR073311	Second white 3	68.033
	CRR073312	Silver flowering 1	17.332
	CRR073313	Silver flowering 2	34.263
	CRR073314	Silver flowering 3	21.544
	CRR073315	Gold flowering 1	4.230
	CRR073316	Gold flowering 2	4.905
	CRR073317	Gold flowering 3	4.393
	CRR073318	Tawny withering 1	26.381
	CRR073319	Tawny withering 2	23.129
	CRR073320	Tawny withering 3	12.631