Gene detail

Detail information of GWHGAAZE026763

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDY10756.1	0	BnaA05g11800D [Brassica napus]
COG	YP_008153931.1	1E-60	ATP-dependent helicase
Swissprot	tr\|Q38953\|DHX8_ARATH	6E-74	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|A0A078FBM0\|A0A078FBM0_BRANA	0	BnaA05g11800D protein {ECO:0000313\|EMBL:CDY10756.1}
TAIR10	AT2G30800.1	0	helicase in vascular tissue and tapetum

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9781644	9790547	-
GWHAAZE00000008	mRNA	9781644	9790547	-
GWHAAZE00000008	exon	9781644	9782249	-
GWHAAZE00000008	exon	9782875	9783882	-
GWHAAZE00000008	exon	9784964	9785677	-
GWHAAZE00000008	exon	9786216	9786249	-
GWHAAZE00000008	exon	9786765	9786817	-
GWHAAZE00000008	exon	9787382	9787543	-
GWHAAZE00000008	exon	9788653	9788711	-
GWHAAZE00000008	exon	9788813	9788903	-
GWHAAZE00000008	exon	9789424	9789519	-
GWHAAZE00000008	exon	9789690	9789764	-
GWHAAZE00000008	exon	9789928	9790234	-
GWHAAZE00000008	exon	9790432	9790547	-
GWHAAZE00000008	CDS	9790432	9790547	-
GWHAAZE00000008	CDS	9789928	9790234	-
GWHAAZE00000008	CDS	9789690	9789764	-
GWHAAZE00000008	CDS	9789424	9789519	-
GWHAAZE00000008	CDS	9788813	9788903	-
GWHAAZE00000008	CDS	9788653	9788711	-
GWHAAZE00000008	CDS	9787382	9787543	-
GWHAAZE00000008	CDS	9786765	9786817	-
GWHAAZE00000008	CDS	9786216	9786249	-
GWHAAZE00000008	CDS	9784964	9785677	-
GWHAAZE00000008	CDS	9782875	9783882	-
GWHAAZE00000008	CDS	9781644	9782249	-

Transcript Sequence
>GWHTAAZE026797 ATGAATTCATGCTCTGTGAATGCAGTTTACACATTTGAAGCCGTCTTGACAAAGGATGAACGTGCTGTTGTGCATAGTTTGTGCAGGAAAAGGGGTATGAAGTCCAAAAGTACTGGGAAGGGGGATCAGCGGCGACTTTCCGTTTACAATGGTAAAACAAGTGTGGCTACGAAGAAGAATGACAAAGTCGCGTCTTTTTTTACATTTTCAGAAGAGGCAAAATATGCTTTACATGACTTATTTACACGGTATCCACCTGATGATCACGATATGAGTGAGAAAATAGATGACAAACACATTGTGAAGTGCGAGAAAAGAAAGATGGATGATTTTTTCTGCAAACCTTCAATTAACAAGGCACAAATTGCAAAGAAGGAGGCATCACTCATCTCTGAAGTGAAAAAAAACCCAAAGTTGAGACAGATTAGTGAAGCGAGGTCTAAGCTTCCAATTACAAGGTTTAAGGATGTCATTGCATCAACAGTAGAATCTCATCAGATTTTTATGACCTTTCAAGACCTTATTTGTTTATTCAACGTTTCAATGCAGGTGGTGTTAATATCTGGTGAAACTGGATGCGGAAAAACCACGCAGGTTCCCCAATATCTTTTGGATCATATGTGGGGTAAGGGTGAGACATGTAAAATAGTCTGTACTCAACCACGAAGAATCTCTACGATATCAGTTGCTGAGAGAATCTCTTCTGAAAGAGGCGAAACTGTTGGAGATACAGTTGGATACAAGATACGGTTGGAGAGTAATGGCGGGCGGAATTCATCTATTGTGTTTTGCACCAACGGGGTACTGTTGAGGGTTCTGGTTTCTAAAGGCAGTGATAGAGTGGAAAGAGAAGCTTCCATAACAATGGCAAGGGATGATGTTTCCGACATAACCCACATTATTGTGGATGAAATTCATGAAAGGGATCGCTTCTCTGATCTCATGCTAGCAATCCTCAGAGACACGCTTCCTTCATATCCTCATTTACGTCTGGTCAAATCTTTCTACTTAGAAGATGTGCTTTCTCTCCTAAAATCGACAAAAAATAGTCACCTTGATTTGACTAAAAGCAATATCATGATTGAGGAGTCCAAGTTAACAAAGGAAGATAGGGTTTCCCTTCAAGAAGCCATTGAGGAAGAAAAAGACTTACTTGATAAGTATCTATCAACTACCAAAGCTGAAGAAATTGACGTTGTTCTTATGGAGAGTTTATTGACGAAAATATGCACCGACACGGAAAATGGAGCGATCCTTGTTTTCCTTCCTGGGTGGGATGATATAAACAGAACCCGAGAGAGGTTGCTTGCTGGTATTTTCAAAGATTCTAAGAAATTTGTAATAATGTCTCTTCATTCTATGGTCCCATCGATGGAGCAAAGGAAGGTTTTTAAACGACCCCCTCATGGTTGCCGCAAAATTGTTCTTTCAACTAACATTGCCGAGACCTCTGTTACTATCGACGATGTTATTTATGTTATAGATAGTGGAAGGATGAAAGAGAAAAATTACGACCCGTATAATAACGTATCGACCCTCAACTCTTCTTGGATTTCGAAAGCGAGTGCAAAGCAGAGAGAAGGACGAGCAGGACGGTGTCAACCAGGAGTATGTTATCATCTTTATTCAAAACTTCGAGCAGCTTCATTGATAGATTTTCAAGTTCCAGAAATTAGGAGAATTCCAATTGAGGAGCTTTGTTTGCAGGTAAAGATTCTCGATCCAGATTGCAAAATAGATGAATTCTTACAAAAGACATTGGACCCACCTATTTCAGAAACAATACGAAACGCAATTACCGTTCTTCAGGATATCGGGGCCTTATCACCTAATGAGAAACTTACAGATCTCGGAAAGAAAATTGGTTCTCTACCAGTTCATCCACTAACAAGCAAGATGCTTTTCATTGCCATTCTAACAAATTGCCTTGACCCGGCTTTGACGTTAGCATGTGCTTCTGACTATAAAGATGCATTCACTATTCCCATACTATCCAACCAAAGGCAGAAAGCAGCAGCTGCAAAATCTGAGCTTTCCATGTTGTACGGTGGATATAGTGATCAATTAGCCATAGTCGCGGCATTCGAGTGCTGGAAAAAGGCCAAGGAAAAGGGTGAAGCAGCCAAGTTTTGTACTTTATACCATGTTTCCACTGGTACTATGAAGATGCTCTTCAAAATGCGCAAACAACTCCAATTGGAATTACTTAAGAGTGGGTTTATTCCCGATGATGTGTCTGTTTGTAATGTTAACGCACATAATCCCGGTGTACTACGTGCAGTTCTTGTTGCTGGCCAGTATCCAATGGTGGGGAGATTGCTTCCCAAAAATGGAGGGCAGAGATGTGTTGTGGAGACTGCTGGTGGCAACAAGGTTCGGTTGCACCCTCAGTCAACTAACTATAAGTTGACTTTCAAGAAGTCTGATCGGCCTTTAATCGTTCACGATGAGGTAACTCGTGTAGACTCGGGTTTGATCATTAGGAACTGTAGTCTCATCGGGCCGTTGCCTTTGTTAATGATTGCAACAGAGATTATAGTGGCTCCTACTAAAGAGAATGATGATGAAAATGGCTCTGAAGAGGATATTATGTCCACTCCGGATACTAAGGTTAAGGTTATTGTTGATCGGTGGCTTTCTTTTGAGTCTACTGCTATTGATGTTGCTCAGATTTACTGCTTGAGAGAGAGATTATCTAAAGCAATCATGCACAAGGTCACGCATCCACGTAAAGTTCTTCCCGAGCTTCTTGAGGCGTCTATCAAATCAATTACGGCTACTCTATCAACTGATGGGATGTTGGGGATTCAGTCGACTACAATGGTGAGTACATGTGAAAATACCCATTTCTTACAGTCGCTTGGCCCACCTGAGATGTTTGCACATACTCCCAAAAATAAAGTTAAGCAACCTGCACCTACTAAGACTAAGACGAAAAAATTAAAAAATCCATCAAACCCGCATCCCCAACCCCCTTTGTCTGCAGCATTGGCGGGCCCATGCCAAAATTTCCCTGCCAGAGTATTCTTGGGCCCCCATCAAACTTATCCAGATGGAGAATTTGCGGGCTATCAAATTTTCCCTGCCGGAGCATTCCCAGACTCGGATCAAAATTTTCCCGCTGGAGCATTGAATTCATATAAACAAATTAATGGAGAGAGTGCGTATCTGTCTCAAATATCTCATGGAGTAGATGTGATTCCATCTGAAAATTTTGGGTCACATGGTCCCACTCCTGTGTTTGGGTCTTTGCCTGAGGTGCATGGAATGGTTACTCCGAGTGTGGGCGGCTCCTTAAAGCGGCGCCGCAGTGATAAATAG

Network for GWHGAAZE026763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01424.23	R3H	9	49	4.10E-07
PF00271.32	Helicase_C	409	533	1.10E-14
PF04408.24	HA2	598	710	3.70E-15
PF07717.17	OB_NTP_bind	758	844	4.20E-09

Protein Sequence

>GWHPAAZE026781
MNSCSVNAVYTFEAVLTKDERAVVHSLCRKRGMKSKSTGKGDQRRLSVYNGKTSVATKKNDKVASFFTFSEEAKYALHDLFTRYPPDDHDMSEKIDDKHIVKCEKRKMDDFFCKPSINKAQIAKKEASLISEVKKNPKLRQISEARSKLPITRFKDVIASTVESHQIFMTFQDLICLFNVSMQVVLISGETGCGKTTQVPQYLLDHMWGKGETCKIVCTQPRRISTISVAERISSERGETVGDTVGYKIRLESNGGRNSSIVFCTNGVLLRVLVSKGSDRVEREASITMARDDVSDITHIIVDEIHERDRFSDLMLAILRDTLPSYPHLRLVKSFYLEDVLSLLKSTKNSHLDLTKSNIMIEESKLTKEDRVSLQEAIEEEKDLLDKYLSTTKAEEIDVVLMESLLTKICTDTENGAILVFLPGWDDINRTRERLLAGIFKDSKKFVIMSLHSMVPSMEQRKVFKRPPHGCRKIVLSTNIAETSVTIDDVIYVIDSGRMKEKNYDPYNNVSTLNSSWISKASAKQREGRAGRCQPGVCYHLYSKLRAASLIDFQVPEIRRIPIEELCLQVKILDPDCKIDEFLQKTLDPPISETIRNAITVLQDIGALSPNEKLTDLGKKIGSLPVHPLTSKMLFIAILTNCLDPALTLACASDYKDAFTIPILSNQRQKAAAAKSELSMLYGGYSDQLAIVAAFECWKKAKEKGEAAKFCTLYHVSTGTMKMLFKMRKQLQLELLKSGFIPDDVSVCNVNAHNPGVLRAVLVAGQYPMVGRLLPKNGGQRCVVETAGGNKVRLHPQSTNYKLTFKKSDRPLIVHDEVTRVDSGLIIRNCSLIGPLPLLMIATEIIVAPTKENDDENGSEEDIMSTPDTKVKVIVDRWLSFESTAIDVAQIYCLRERLSKAIMHKVTHPRKVLPELLEASIKSITATLSTDGMLGIQSTTMVSTCENTHFLQSLGPPEMFAHTPKNKVKQPAPTKTKTKKLKNPSNPHPQPPLSAALAGPCQNFPARVFLGPHQTYPDGEFAGYQIFPAGAFPDSDQNFPAGALNSYKQINGESAYLSQISHGVDVIPSENFGSHGPTPVFGSLPEVHGMVTPSVGGSLKRRRSDK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14442	DHX36, RHAU	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.107
	SRR3591706	second leaf	5.999
	SRR3591707	mature leaf	5.754
	SRR3591708	Shoot apex	11.155
	SRR3591709	Stem	6.610
	SRR3591710	White floral bud	6.383
	SRR3591711	White flower	9.951
	SRR3591712	Green floral bud	9.608
	SRR3591713	Yellow flower	6.627
SRP173429	SRR8316895	Juvenile bud stage	6.751
	SRR8316896	Juvenile bud stage	9.566
	SRR8316897	Juvenile bud stage	4.717
	SRR8316894	Third green stage	4.111
	SRR8316900	Third green stage	8.680
	SRR8316901	Third green stage	8.661
	SRR8316898	Complete white stage	2.252
	SRR8316899	Complete white stage	8.674
	SRR8316903	Complete white stage	5.342
	SRR8316902	Silver flowering stage	3.133
	SRR8316904	Silver flowering stage	5.368
	SRR8316905	Silver flowering stage	2.114
	SRR8316906	Gold flowering stage	6.493
	SRR8316907	Gold flowering stage	5.905
	SRR8316908	Gold flowering stage	6.968
SRP132670	SRR6706286	Control	8.088
	SRR6706287	Light intensity 50%	7.240
	SRR6706288	Light intensity 20%	7.739
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.564
	CNS0095593	Slightly white alabastrum(diploid) 2	6.684
	CNS0095594	Slightly white alabastrum(diploid) 3	6.263
	CNS0095595	Whole white alabastrum(diploid) 2	5.298
	CNS0095596	Whole white alabastrum(diploid) 3	4.504
	CNS0095597	Whole white alabastrum(diploid) 4	3.369
	CNS0095598	Silvery flower (diploied) 1	7.027
	CNS0095599	Silvery flower (diploied) 2	5.520
	CNS0095600	Silvery flower (diploied) 3	8.349
	CNS0095601	Golden flower (diploid) 1	5.062
	CNS0095602	Golden flower (diploid) 2	7.529
	CNS0095603	Golden flower (diploid) 3	7.549
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.591
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.320
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.820
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.177
	CNS0095610	Silvery flower (tetraploid) 1	6.257
	CNS0095611	Silvery flower (tetraploid) 2	6.099
	CNS0095612	Silvery flower (tetraploid) 3	4.970
	CNS0095613	Golden flower (tetraploid) 1	3.682
	CNS0095614	Golden flower (tetraploid) 2	6.063
	CNS0095615	Golden flower (tetraploid) 3	5.516
CRA001975	CRR073297	Stem 1	7.936
	CRR073298	Stem 2	7.998
	CRR073299	Stem 3	6.858
	CRR073300	Leaf 1	7.750
	CRR073301	Leaf 2	7.442
	CRR073302	Leaf 3	4.993
	CRR073303	Juvenile bud 1	5.880
	CRR073304	Juvenile bud 2	3.717
	CRR073305	Juvenile bud 3	6.272
	CRR073306	Third green 1	1.780
	CRR073307	Third green 2	1.615
	CRR073308	Third green 3	1.673
	CRR073309	Second white 1	2.258
	CRR073310	Second white 2	3.345
	CRR073311	Second white 3	5.186
	CRR073312	Silver flowering 1	4.195
	CRR073313	Silver flowering 2	5.185
	CRR073314	Silver flowering 3	4.952
	CRR073315	Gold flowering 1	3.055
	CRR073316	Gold flowering 2	5.499
	CRR073317	Gold flowering 3	1.888
	CRR073318	Tawny withering 1	7.380
	CRR073319	Tawny withering 2	4.704
	CRR073320	Tawny withering 3	5.696