Gene detail

Detail information of GWHGAAZE026764

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10822.1	9.6749E-82	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q84W80\|FBL42_ARATH	1E-16	F-box/LRR-repeat protein At3g03360
trEMBL	tr\|A0A068UR96\|A0A068UR96_COFCA	4E-82	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10822.1}
TAIR10	AT3G29830.1	7E-16	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9852843	9855345	-
GWHAAZE00000008	mRNA	9852843	9855345	-
GWHAAZE00000008	exon	9852843	9852862	-
GWHAAZE00000008	exon	9852956	9853262	-
GWHAAZE00000008	exon	9853557	9853709	-
GWHAAZE00000008	exon	9853819	9854697	-
GWHAAZE00000008	exon	9855304	9855345	-
GWHAAZE00000008	CDS	9855304	9855345	-
GWHAAZE00000008	CDS	9853819	9854697	-
GWHAAZE00000008	CDS	9853557	9853709	-
GWHAAZE00000008	CDS	9852956	9853262	-
GWHAAZE00000008	CDS	9852843	9852862	-

Transcript Sequence
>GWHTAAZE026798 ATGGTGATGGTGCGGCTTTCGACTAGAGCTGTTTTACAGAAGTGTCACAAAAATGGGAGAGATACCTACCAGGAAGATAAAATTAGCGGGTTACCTGACGAAATTCTTGCTGAGATTCTGTCCCTATTGACATTTAAGGAAGCGATGGCGACTAGCATTCTGTCGAGACGGTGGAGGTATCTCTGGACTTTCATCACTCGTAAATTGAGTTTCGATACTCGCAAGCGCTTGTGCGACAAGGCGTTTTACCAAGAGTCATTTCGTAGAGATGTATTCAAGTATAGGGCAAAGTTTGTTGGTTGGGTAAACCATGTGCTGAAACATCACCAATGTACCACTGAGGTTGACCAATTTAGAGTTTGTTTTAGTTTGGGAGCTAGTTATTCAGCAAATCTTGATAATTGGGTTAAGTTTGCAGTCGAGAAAAGAGTTCGGAAGCTTGAGTTGAATTTGACAAACTTCGATGGTTTGAGTCAGCGATATCCTTATGTTTTCACGAGTGTGGAAAGGCTGAAGCTGCTGCCTCGGAATTTTACCTCCTTAATATCCCTTAGCTTGATGAGTGTTGATGTGACCGGAGAAGTTGTTCAGTATTTCTTGGCCAAATGTCCTTTTCTCGAGTATCTATGCGTGGTACACTCAACCACTATATCAAATCTTAAAATTGCAGGCGAATCACTCAAGTTGAAGTGCTTGGACTTGTACCGGTGCAGACCGATGGAAAATTTGGAGATTTCTGCACCGAATCTTGTCTCATTTTCTTACACTGGGCCCAAGACAGACGTGCCTTTTAAGAACGTCCCCCTCCTTTCTGAGCTGCGTCTAGGGGATGAGTATTGCGACTCCTTCATTTTCGAAGCTCCCAAGCATTCCATCTATTTCACTCAGCTTGAGAGGCTTACATTAGTATTACCCCTAACGGCGAGCGAAACGGAGATCTTCCCTTTAAGTCTCCCCAAATTATCTAATCTCAAGCAGTTGGAATTACATATAGGAATAACTCGCGGCTATCCGCTCGATTGCTTTACTGCCATATTAGAGGCGTCTCCCATATTGTCTAAGTTTGTGATGAAGTTGGCATTTATCGACTCTATGCCCGATTCGCAATATATGGATCTAGAATGGTGGTCCATAGGTACAAGTCATCCGTGCCTGAAGGAGATTGAATTTGTTGGATTTGTCGGGCATCGAAGTGATTATGGGTTGGCCTTGCACTTGCTTGAGACTGCACGGTCACTTGAAAGGATAACCTTTGATACTCGCCATCCTGGTTACGTGTGGGGCCCAGATGTCTTTTGTGATGCTTTTGCGGACAAAGTGCCCGAAGACCGAGAATTTGCAAAAGCGCGTGCCCGACAGTTAAGATCAAAATTACCCGCAGGCCATGTAGTAGCACTTTAG

Network for GWHGAAZE026764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	27	67	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.752
	SRR3591706	second leaf	0.872
	SRR3591707	mature leaf	0.959
	SRR3591708	Shoot apex	1.534
	SRR3591709	Stem	2.138
	SRR3591710	White floral bud	1.455
	SRR3591711	White flower	2.168
	SRR3591712	Green floral bud	0.528
	SRR3591713	Yellow flower	2.000
SRP173429	SRR8316895	Juvenile bud stage	3.015
	SRR8316896	Juvenile bud stage	3.946
	SRR8316897	Juvenile bud stage	0.884
	SRR8316894	Third green stage	1.271
	SRR8316900	Third green stage	3.726
	SRR8316901	Third green stage	3.733
	SRR8316898	Complete white stage	2.039
	SRR8316899	Complete white stage	5.126
	SRR8316903	Complete white stage	3.137
	SRR8316902	Silver flowering stage	2.856
	SRR8316904	Silver flowering stage	4.519
	SRR8316905	Silver flowering stage	1.723
	SRR8316906	Gold flowering stage	6.886
	SRR8316907	Gold flowering stage	5.210
	SRR8316908	Gold flowering stage	3.204
SRP132670	SRR6706286	Control	3.678
	SRR6706287	Light intensity 50%	3.052
	SRR6706288	Light intensity 20%	3.958
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.271
	CNS0095593	Slightly white alabastrum(diploid) 2	1.606
	CNS0095594	Slightly white alabastrum(diploid) 3	3.119
	CNS0095595	Whole white alabastrum(diploid) 2	1.860
	CNS0095596	Whole white alabastrum(diploid) 3	0.930
	CNS0095597	Whole white alabastrum(diploid) 4	1.738
	CNS0095598	Silvery flower (diploied) 1	5.917
	CNS0095599	Silvery flower (diploied) 2	2.974
	CNS0095600	Silvery flower (diploied) 3	6.709
	CNS0095601	Golden flower (diploid) 1	3.404
	CNS0095602	Golden flower (diploid) 2	4.588
	CNS0095603	Golden flower (diploid) 3	5.194
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.275
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.095
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.286
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.234
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.995
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.277
	CNS0095610	Silvery flower (tetraploid) 1	5.480
	CNS0095611	Silvery flower (tetraploid) 2	4.193
	CNS0095612	Silvery flower (tetraploid) 3	4.864
	CNS0095613	Golden flower (tetraploid) 1	3.125
	CNS0095614	Golden flower (tetraploid) 2	3.901
	CNS0095615	Golden flower (tetraploid) 3	3.448
CRA001975	CRR073297	Stem 1	5.039
	CRR073298	Stem 2	4.815
	CRR073299	Stem 3	4.773
	CRR073300	Leaf 1	4.439
	CRR073301	Leaf 2	5.207
	CRR073302	Leaf 3	4.349
	CRR073303	Juvenile bud 1	4.573
	CRR073304	Juvenile bud 2	4.074
	CRR073305	Juvenile bud 3	5.333
	CRR073306	Third green 1	2.118
	CRR073307	Third green 2	1.133
	CRR073308	Third green 3	1.528
	CRR073309	Second white 1	4.415
	CRR073310	Second white 2	3.700
	CRR073311	Second white 3	2.142
	CRR073312	Silver flowering 1	2.708
	CRR073313	Silver flowering 2	2.773
	CRR073314	Silver flowering 3	2.156
	CRR073315	Gold flowering 1	3.723
	CRR073316	Gold flowering 2	4.124
	CRR073317	Gold flowering 3	3.435
	CRR073318	Tawny withering 1	3.025
	CRR073319	Tawny withering 2	2.863
	CRR073320	Tawny withering 3	3.070