Gene detail

Detail information of GWHGAAZE026766

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10822.1	2.49996E-82	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q84W80\|FBL42_ARATH	4E-16	F-box/LRR-repeat protein At3g03360
trEMBL	tr\|A0A068UR96\|A0A068UR96_COFCA	9E-83	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10822.1}
TAIR10	AT3G03360.1	2E-15	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9865511	9867302	-
GWHAAZE00000008	mRNA	9865511	9867302	-
GWHAAZE00000008	exon	9866397	9867302	-
GWHAAZE00000008	exon	9866135	9866287	-
GWHAAZE00000008	exon	9865511	9865840	-
GWHAAZE00000008	CDS	9866397	9867302	-
GWHAAZE00000008	CDS	9866135	9866287	-
GWHAAZE00000008	CDS	9865511	9865840	-

Transcript Sequence
>GWHTAAZE026800 ATGCCTTTCTTATTTCTATATTTTCAGTGTCACAAAAATGGGAGAGATACCTACCAGGAAGATAAAATTAGCGGGTTACCTGACGAAATTCTTGCTGAGATTCTGTCCCTATTGACATTTAAGGAAGCGATGGCGACTAGCATTCTGTCGAGACGGTGGAGGTATCTCTGGACTTTCATCACTCGTAAATTGAGTTTCGATACTCGCAAGCGCTTGTGCGACAAGGCGTTTTACCAAGAGTCATTTCGTAGAGATGTATTCAAGTATAGGGCAAAGTTTGTTGGTTGGGTAAACCATGTGCTGAAACATCACCAATGTACCACAGAGGTTGACCAATTTACAGTTTGTTTTAGTTTGGGAGCTAGTTATTCAGCAAATCTTGATAATTGGGTTAAGTTTGCAGTCGAGAAAAGAGTTCGGAAGCTTGAGTTGAATTTGACAAACTTCGATGGTTTGAGTCAGCGATATCCTTATGTTTTCACGAGTGTGGAAAGGCTGAAGCTGCTGCCTCGGAATTTTACCTCCTTAATATCCCTTAGCTTGATGAGTGTTGATGTGACCGGAGAAGTTGTTCAGTATTTCTTGGCCGAATGTCCTTTTCTCGAGTATCTATGCGTGGTACACTCAACCACTATATCAAATCTTAAAATTGCAGGCGAATCACTCAAGTTGAAGTGCTTGGACTTGTACCGGTGCAGACCGATGGAAAATTTGGAGATTTCTGCACCGAATCTTGTCTCATTTTCTTACACTGGGCCCAAGACAGACGTGCCCTTTAAGAACGTCCCCCTCCTTTCTGAGCTGCGTCTAGGGGATGAGTATTGCGACTCCTTCATTTTCGAAGCTCCCAAGCATTCCATCTATTTCACTCAGCTTGAGAGGCTTACATTAGTATTACCCCTAACGGCGAGCGAAACGGAGATCTTCCCTTTAAGTCTCCCCAAATTATCTAATCTCAAGCAGTTGGAATTACATATAGGAATAACTCGCGGCTATCCGCTCGATTGCTTTACTGCCATATTAGAGGCGTCTCCCATATTGTCTAAGTTTGTGATAAAGTTGGCATTTATCGACTCTATGCCCGATTCGCAATATATGGATCTAGAATGGTGGTCCATAGGTACAAGTCATCCGTGCCTGAAGGAGATTGAATTTGTTGGATTTGTCGGGCATCGAAGTGATTATGGATTGGCCTTGCACTTGCTTGAGACTGCACGGTCACTTGAAAGGATAACCTTTGATACTCGCCATCCTGGTTACGTGTGGGGCCCAGATGTCTTTTGTGATGCTTTTGCGGACAAAGTGCCTGAAGACCGAGAATTTGCAAAAGCGCGTGCCCGACAGTTGAGATCAAAATTACCCGCAGGCGCTGATTTAGTAATTGTTTAG

Network for GWHGAAZE026766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	22	62	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.312
	SRR3591706	second leaf	0.759
	SRR3591707	mature leaf	0.743
	SRR3591708	Shoot apex	0.755
	SRR3591709	Stem	1.283
	SRR3591710	White floral bud	1.777
	SRR3591711	White flower	1.751
	SRR3591712	Green floral bud	0.418
	SRR3591713	Yellow flower	1.546
SRP173429	SRR8316895	Juvenile bud stage	2.577
	SRR8316896	Juvenile bud stage	4.083
	SRR8316897	Juvenile bud stage	0.893
	SRR8316894	Third green stage	1.008
	SRR8316900	Third green stage	2.401
	SRR8316901	Third green stage	3.212
	SRR8316898	Complete white stage	1.519
	SRR8316899	Complete white stage	4.774
	SRR8316903	Complete white stage	2.153
	SRR8316902	Silver flowering stage	2.786
	SRR8316904	Silver flowering stage	3.303
	SRR8316905	Silver flowering stage	1.400
	SRR8316906	Gold flowering stage	5.543
	SRR8316907	Gold flowering stage	3.792
	SRR8316908	Gold flowering stage	2.225
SRP132670	SRR6706286	Control	2.992
	SRR6706287	Light intensity 50%	2.852
	SRR6706288	Light intensity 20%	2.736
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.660
	CNS0095593	Slightly white alabastrum(diploid) 2	1.914
	CNS0095594	Slightly white alabastrum(diploid) 3	4.457
	CNS0095595	Whole white alabastrum(diploid) 2	2.079
	CNS0095596	Whole white alabastrum(diploid) 3	2.009
	CNS0095597	Whole white alabastrum(diploid) 4	1.093
	CNS0095598	Silvery flower (diploied) 1	4.393
	CNS0095599	Silvery flower (diploied) 2	3.367
	CNS0095600	Silvery flower (diploied) 3	4.940
	CNS0095601	Golden flower (diploid) 1	3.404
	CNS0095602	Golden flower (diploid) 2	5.717
	CNS0095603	Golden flower (diploid) 3	5.242
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.442
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.275
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.609
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.530
	CNS0095610	Silvery flower (tetraploid) 1	4.927
	CNS0095611	Silvery flower (tetraploid) 2	5.188
	CNS0095612	Silvery flower (tetraploid) 3	4.536
	CNS0095613	Golden flower (tetraploid) 1	2.305
	CNS0095614	Golden flower (tetraploid) 2	4.494
	CNS0095615	Golden flower (tetraploid) 3	3.811
CRA001975	CRR073297	Stem 1	5.623
	CRR073298	Stem 2	5.107
	CRR073299	Stem 3	3.561
	CRR073300	Leaf 1	4.311
	CRR073301	Leaf 2	3.105
	CRR073302	Leaf 3	3.159
	CRR073303	Juvenile bud 1	3.747
	CRR073304	Juvenile bud 2	2.759
	CRR073305	Juvenile bud 3	2.959
	CRR073306	Third green 1	1.212
	CRR073307	Third green 2	1.691
	CRR073308	Third green 3	1.258
	CRR073309	Second white 1	2.578
	CRR073310	Second white 2	2.960
	CRR073311	Second white 3	2.105
	CRR073312	Silver flowering 1	2.069
	CRR073313	Silver flowering 2	1.228
	CRR073314	Silver flowering 3	1.713
	CRR073315	Gold flowering 1	2.378
	CRR073316	Gold flowering 2	2.887
	CRR073317	Gold flowering 3	3.386
	CRR073318	Tawny withering 1	3.565
	CRR073319	Tawny withering 2	1.953
	CRR073320	Tawny withering 3	0.995