Gene detail

Detail information of GWHGAAZE026767

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008229590.1	0	PREDICTED: WD repeat-containing protein 26-like [Prunus mume]
COG	YP_007064635.1	2E-33	WD40 repeat-containing protein
Swissprot	tr\|A8IZG4\|CIAO1_CHLRE	5E-19	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255\|HAMAP-Rule:MF_03037}
trEMBL	tr\|A0A068VAJ6\|A0A068VAJ6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_183 {ECO:0000313\|EMBL:CDP17860.1}
TAIR10	AT5G08560.2	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9877156	9881562	+
GWHAAZE00000008	mRNA	9877156	9881562	+
GWHAAZE00000008	exon	9877156	9877941	+
GWHAAZE00000008	exon	9878647	9878748	+
GWHAAZE00000008	exon	9880371	9881000	+
GWHAAZE00000008	exon	9881314	9881562	+
GWHAAZE00000008	CDS	9877156	9877941	+
GWHAAZE00000008	CDS	9878647	9878748	+
GWHAAZE00000008	CDS	9880371	9881000	+
GWHAAZE00000008	CDS	9881314	9881562	+

Transcript Sequence
>GWHTAAZE026801 ATGGGAGGTGTAGAGGATGAAGAACCACCCTCAAAACGCGTAAAAGTATCTTCAGGAGAATCAAGAGGCCTTTCCAACGGTAAGTCTCTTGCGGACCCCACAAGTTGCTCTTTGAGTGTCTCAATGGCTCGGCCCCTAGCTTCTCAAGGGGACGAACAAATTTTTGGCTCACAAAGGATCAAGAAGGTGGAACTCGTCCGAATCATAGCTGAAGCATTATATTCTCTTGGCTATAACAAAACCGCGGCAAATCTAGAGGAAGAATCCGGAATACACTTACACTCCACCGCAGTAAACTTGTTTATGCAGCAAATTCTTGATGGTAATTGGGACCAAAGTGTAGCCACATTGCATAAAATTGGCCTAGTCGACGAGAGTATCGTTAAGTCTGCATCTTTTATGATATTAGAGCAAAAGTTTTTTGAACTTTTGGATGGGGAAAAAGTTATGGATGCTTTAAAGACATTGAGGAACGATCTTGCGCCTCTTTGCATAAATATGGGTAGAGTACGCGACCTTTGTTCCTGTATTGTATCTCCTTCACAGCGTGTTCTTGTTGGTCAAAATGTTGTGAGAATAAAGTCTAGGCCGAAACTACTAGAGGAGTTACAGAAATTGCTTCCTCCTACAGTGATTATACCAGAAAGAAGGTTGGTACATCTCGTTGAGCAGGCTCTCGATTTGCAACAAGATGCTTGCTTGTTTCACAATTCTTTGGTTGGGGAAATGTCATTGTTATCTGATCATCAATGTGGAAAAGATTATATCCCTTCTCAAACTTTACAGGTATTACAAGAACACACTGATGAAGTCTGGTTCTTGCAATTTTCACATAATGGGAAATACTTAGCCTCATCATCTAAGGATCGATCTGCAATTATATGGAAGGTCAATGTGGAGGGTAGAGTGGTGCTAAAGCATAGACTATCGGGTCATCAAAAACCTGTCTCATGTGTTTCATGGAGCCCTGATGACCAGCAGCTCCTCACCTGTGGTGTTGAGGAGTCGGTGAGACGCTGGGATGTTTCTTCGGGTGAATGCCTCTGTGTTTATGAGAAAAATGGACTTGGTTTGGTCTCTTGCGGATGGTCTCCAAACGGAAAATGGATATTCTCTGGCATTACAGATAAAAGCATTAGCATGTGGGATTTAGAAGGGAAAGAAATGGAATCTTGGAAAGGGCAACAAACTGTTAGGATCTCGGATTTGGGAGTAATGAGCGATGGGAAGCAGATTATTACTATTTGTAGAAATAATGTGATACAATTGTTTGATAGGGAAGCGAGAGCCGAAAAAGTAATTGAGGAGGATCAAGTAATTACGTCATTTTCTTTATCGAGGGACAACAAATTCTTGCTTATTAGTCTTTTGAACCAAGAAATACATCTTTGGAATATTGAGGGGCATATAAGGCGTGTTGCGAAGTACAAAGGTCATAAACGTACAAGGTTTGTTGTTAGAGCCTGTTTTGGCGGACATGAGCAAGCATTTGTTGCTGGTGGTAGTGAGGACTCTCAGGTATATATATGGCATAGAAGCTCAGGAAAGCTGATACAGACATTGGCGGGCCATTCCGGAGCTGTTAATTGCGTTAGCTGGAACACATCAAACCCCCACATGTTGGCTTCGGCTAGTGATGATCGAACAATACGTGTCTGGGGATTAAATCAGGTAAACATGAAGCAAAAAGGTACGCACACCAATGGTTTCCATTACTGCAATGGTGGAACTATAAAGATGGAGGAGGATAAAGGCATGGAATCTTGA

Network for GWHGAAZE026767

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	259	296	5.10E-05
PF00400.33	WD40	306	341	4.70E-05
PF00400.33	WD40	347	383	0.0015
PF00400.33	WD40	473	510	0.13
PF00400.33	WD40	515	553	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.574
	SRR3591706	second leaf	17.118
	SRR3591707	mature leaf	14.367
	SRR3591708	Shoot apex	21.861
	SRR3591709	Stem	48.146
	SRR3591710	White floral bud	35.675
	SRR3591711	White flower	55.366
	SRR3591712	Green floral bud	30.544
	SRR3591713	Yellow flower	50.372
SRP173429	SRR8316895	Juvenile bud stage	19.606
	SRR8316896	Juvenile bud stage	26.579
	SRR8316897	Juvenile bud stage	11.233
	SRR8316894	Third green stage	11.885
	SRR8316900	Third green stage	32.873
	SRR8316901	Third green stage	35.051
	SRR8316898	Complete white stage	20.971
	SRR8316899	Complete white stage	52.150
	SRR8316903	Complete white stage	36.050
	SRR8316902	Silver flowering stage	32.765
	SRR8316904	Silver flowering stage	47.396
	SRR8316905	Silver flowering stage	22.944
	SRR8316906	Gold flowering stage	82.792
	SRR8316907	Gold flowering stage	69.818
	SRR8316908	Gold flowering stage	81.855
SRP132670	SRR6706286	Control	31.672
	SRR6706287	Light intensity 50%	30.049
	SRR6706288	Light intensity 20%	26.644
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.236
	CNS0095593	Slightly white alabastrum(diploid) 2	21.321
	CNS0095594	Slightly white alabastrum(diploid) 3	20.446
	CNS0095595	Whole white alabastrum(diploid) 2	21.268
	CNS0095596	Whole white alabastrum(diploid) 3	21.005
	CNS0095597	Whole white alabastrum(diploid) 4	20.473
	CNS0095598	Silvery flower (diploied) 1	34.720
	CNS0095599	Silvery flower (diploied) 2	29.400
	CNS0095600	Silvery flower (diploied) 3	70.025
	CNS0095601	Golden flower (diploid) 1	36.458
	CNS0095602	Golden flower (diploid) 2	64.204
	CNS0095603	Golden flower (diploid) 3	59.978
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.749
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.490
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.232
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.353
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.951
	CNS0095610	Silvery flower (tetraploid) 1	63.484
	CNS0095611	Silvery flower (tetraploid) 2	61.822
	CNS0095612	Silvery flower (tetraploid) 3	72.531
	CNS0095613	Golden flower (tetraploid) 1	45.434
	CNS0095614	Golden flower (tetraploid) 2	50.610
	CNS0095615	Golden flower (tetraploid) 3	110.441
CRA001975	CRR073297	Stem 1	22.352
	CRR073298	Stem 2	25.633
	CRR073299	Stem 3	19.838
	CRR073300	Leaf 1	30.742
	CRR073301	Leaf 2	28.532
	CRR073302	Leaf 3	20.546
	CRR073303	Juvenile bud 1	22.849
	CRR073304	Juvenile bud 2	20.305
	CRR073305	Juvenile bud 3	28.558
	CRR073306	Third green 1	23.351
	CRR073307	Third green 2	18.885
	CRR073308	Third green 3	24.322
	CRR073309	Second white 1	30.417
	CRR073310	Second white 2	37.735
	CRR073311	Second white 3	35.940
	CRR073312	Silver flowering 1	25.598
	CRR073313	Silver flowering 2	26.457
	CRR073314	Silver flowering 3	23.633
	CRR073315	Gold flowering 1	12.778
	CRR073316	Gold flowering 2	19.927
	CRR073317	Gold flowering 3	12.772
	CRR073318	Tawny withering 1	23.005
	CRR073319	Tawny withering 2	19.021
	CRR073320	Tawny withering 3	18.810