Gene detail

Detail information of GWHGAAZE026770

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010102129.1	ATP-dependent zinc metalloprotease FTSH 2 [Morus notabilis]
COG	YP_724043.1	FtsH peptidase
Swissprot	tr\|O80860\|FTSH2_ARATH	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Precursor)
trEMBL	tr\|W9RHR9\|W9RHR9_9ROSA	ATP-dependent zinc metalloprotease FTSH 2 {ECO:0000313\|EMBL:EXB92379.1}
TAIR10	AT2G30950.1	FtsH extracellular protease family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9934756	9939606	+
GWHAAZE00000008	mRNA	9934756	9939606	+
GWHAAZE00000008	exon	9934756	9935940	+
GWHAAZE00000008	exon	9936491	9936804	+
GWHAAZE00000008	exon	9937648	9937888	+
GWHAAZE00000008	exon	9939268	9939606	+
GWHAAZE00000008	CDS	9934756	9935940	+
GWHAAZE00000008	CDS	9936491	9936804	+
GWHAAZE00000008	CDS	9937648	9937888	+
GWHAAZE00000008	CDS	9939268	9939606	+

Transcript Sequence
>GWHTAAZE026804 ATGGCAGCATCGTCAGCTTGCGTTGTGGGAAATAATTTATCTACTCGGAGTACGAAATCAGGTTTGAGCAAGGAAATTTACTTCAGACACCAATTTCCTTCCACAAGCTTGCCATCATTGCGTAAGGCATCAAAATCATTCATTGTAAAAGCCTCTCTTGACCAAAGTCAGCATGAAGGAAGAAGAGGGTTTCTAAAGTTTTTGCTTGGAAATGTTGGAATTAGTTTGCCTGCATTAGTAGGTGTTGGGAGCGCTTATGCAGATGAACAAGGGGTTTCTAACTCAAGGATGTCTTATTCTAGGTTTTTAGAGTATTTAGACAAGGACAGGGTGAACAAAGTAGATGTATTCGAAAATGGTACCATAGCTGTTGTTGAGGCTGTCTCTCCAGAGTTGGGTAACCGTGTGCAGAGAGTTCGTGTGCAACTTCCGGGACTCAGCCAAGAACTTCTTCAGAAGATCAGAGAAAAGAACATTGACTTTGCTGCTCACAATGCTCAAGAGGATTCAGGTAACTTTTTATTTGACTTGATTGGGAATTTGGCTTTCCCACTTCTCCTGATTGGGGGCCTGTTCCTTTTATCGAGGCGCTCTCCTGGAGGAGGTGGTCCCGGCGGGCCTGGTGGTCCTCTTTCGTTTGGTCAATCGAAGGCTAAGTTCCAAATGGAACCAAACACCGGTGTGACATTCGATGATGTCGCTGGAGTAGACGAAGCAAAGCAGGATTTCATGGAGGTTGTAGAGTTCTTGAAGAAGCCTGAGAGGTTCACATCAGTTGGGGCCCGCATTCCTAAAGGTGTTCTTCTTGTGGGCCCACCGGGAACTGGAAAAACCCTGCTAGCCAAGGCGATTGCTGGTGAAGCGGGCGTTCCATTTTTCTCTATCTCGGGTTCGGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCCTCTAGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGGGGAGCTGGAATCGGAGGGGGTAATGATGAAAGGGAACAAACCCTTAACCAACTTTTGACAGAGATGGATGGGTTTGAAGGAAACACTGGTGTTATTGTAATTGCAGCAACTAATCGTGCTGACATTCTTGACTCTGCCTTGTTGAGGCCAGGGCGGTTCGATAGACAGGTATCTGTTGATGTTCCAGATGTTCGAGGAAGAACAGATATATTAAAGGTTCATGGAAGCAATAAGAAGTTTGATGCAGATGTGTCTCTTGAAGTAGTAGCAATGAGGACACCTGGTTTCAGTGGAGCAGATCTTGCAAACCTATTAAATGAGGCGGCTATATTGGCTGGTCGACGAGGAAAGACAGGTATCTCTTCCAAAGAGATTGATGATTCAATTGATAGGATAGTAGCTGGAATGGAAGGGACAGTTATGACAGATGGAAAGAGCAAAAGTCTGGTGGCATACCATGAAGTTGGTCATGCCATTTGTGGGACGCTTACTCCAGGGCACGATGCAGTACAGAAGGTCACCCTAGTCCCACGTGGTCAAGCACGGGGTCTGACTTGGTTCATTCCCTCGGATGACCCGACTTTGATCTCGAAGCAGCAACTCTTTGCAAGAATTGTTGGTGGGCTTGGTGGAAGGGCTGCTGAGGAAGTGATCTTTGGCGAGTCTGAGGTAACCACTGGTGCAGCCAGTGATCTGCAGCAGATCACTGGTTTGGCCAAACAGATGGTGGTCACATTCGGCATGTCCGAGCTTGGACCCTGGTCGCTTATGGACTCATCGGCTCAAACTGACGTCATCATGCGAATGATGGCCCGGAATTCAATGTCGGAAAGGCTAGCTGAGGACATTGATACCGCAATCAAGAAGCTCTCTGACACCGCATATGAGATTGCACTGAGCCAGATAAAGAGCAACCGCGAAGCCATTGATAAGATCGTGGAAGTTCTTCTCGAGAAGGAAACAATGACTGGAGATGAATTCCGGGCAATTCTTTCTGAGTTCGTCGAAATCCCGGTCGAGAATCGGGTTTCTCCGGTGGTTCCAACTCCGGTCGCTGTATAA

Network for GWHGAAZE026770

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0042

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	267	398	1.10E-45
PF17862.2	AAA_lid_3	422	465	5.20E-11
PF01434.19	Peptidase_M41	481	669	6.50E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0004222	molecular_function	metalloendopeptidase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	142.841
	SRR3591706	second leaf	297.467
	SRR3591707	mature leaf	436.185
	SRR3591708	Shoot apex	132.638
	SRR3591709	Stem	179.773
	SRR3591710	White floral bud	163.068
	SRR3591711	White flower	416.762
	SRR3591712	Green floral bud	115.351
	SRR3591713	Yellow flower	382.923
SRP173429	SRR8316895	Juvenile bud stage	79.419
	SRR8316896	Juvenile bud stage	111.306
	SRR8316897	Juvenile bud stage	50.992
	SRR8316894	Third green stage	52.982
	SRR8316900	Third green stage	186.016
	SRR8316901	Third green stage	203.574
	SRR8316898	Complete white stage	120.535
	SRR8316899	Complete white stage	257.707
	SRR8316903	Complete white stage	197.477
	SRR8316902	Silver flowering stage	223.155
	SRR8316904	Silver flowering stage	269.531
	SRR8316905	Silver flowering stage	163.327
	SRR8316906	Gold flowering stage	554.560
	SRR8316907	Gold flowering stage	434.969
	SRR8316908	Gold flowering stage	495.847
SRP132670	SRR6706286	Control	294.313
	SRR6706287	Light intensity 50%	268.520
	SRR6706288	Light intensity 20%	274.559
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.236
	CNS0095593	Slightly white alabastrum(diploid) 2	69.000
	CNS0095594	Slightly white alabastrum(diploid) 3	58.156
	CNS0095595	Whole white alabastrum(diploid) 2	73.621
	CNS0095596	Whole white alabastrum(diploid) 3	75.954
	CNS0095597	Whole white alabastrum(diploid) 4	76.787
	CNS0095598	Silvery flower (diploied) 1	216.163
	CNS0095599	Silvery flower (diploied) 2	213.896
	CNS0095600	Silvery flower (diploied) 3	833.053
	CNS0095601	Golden flower (diploid) 1	272.321
	CNS0095602	Golden flower (diploid) 2	738.099
	CNS0095603	Golden flower (diploid) 3	737.114
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	62.941
	CNS0095606	Slightly white alabastrum(tetraploid) 3	172.432
	CNS0095607	Whole white alabastrum(tetraploid) 1	48.094
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.218
	CNS0095609	Whole white alabastrum(tetraploid) 3	180.681
	CNS0095610	Silvery flower (tetraploid) 1	902.638
	CNS0095611	Silvery flower (tetraploid) 2	1011.437
	CNS0095612	Silvery flower (tetraploid) 3	447.261
	CNS0095613	Golden flower (tetraploid) 1	683.260
	CNS0095614	Golden flower (tetraploid) 2	932.971
	CNS0095615	Golden flower (tetraploid) 3	679.298
CRA001975	CRR073297	Stem 1	123.439
	CRR073298	Stem 2	118.059
	CRR073299	Stem 3	143.823
	CRR073300	Leaf 1	172.404
	CRR073301	Leaf 2	182.757
	CRR073302	Leaf 3	157.451
	CRR073303	Juvenile bud 1	221.356
	CRR073304	Juvenile bud 2	218.320
	CRR073305	Juvenile bud 3	222.056
	CRR073306	Third green 1	310.290
	CRR073307	Third green 2	184.160
	CRR073308	Third green 3	224.643
	CRR073309	Second white 1	542.017
	CRR073310	Second white 2	658.733
	CRR073311	Second white 3	679.164
	CRR073312	Silver flowering 1	689.042
	CRR073313	Silver flowering 2	633.915
	CRR073314	Silver flowering 3	622.261
	CRR073315	Gold flowering 1	1458.169
	CRR073316	Gold flowering 2	1656.922
	CRR073317	Gold flowering 3	1162.947
	CRR073318	Tawny withering 1	112.516
	CRR073319	Tawny withering 2	100.228
	CRR073320	Tawny withering 3	93.292