Gene detail

Detail information of GWHGAAZE026806

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006377362.1	hypothetical protein POPTR_0011s05250g [Populus trichocarpa]
COG	YP_003690422.1	Ketol-acid reductoisomerase
Swissprot	tr\|Q05758\|ILV5_ARATH	Ketol-acid reductoisomerase, chloroplastic (Precursor)
trEMBL	tr\|U5FYE1\|U5FYE1_POPTR	Ketol-acid reductoisomerase {ECO:0000256\|PIRNR:PIRNR000118}
TAIR10	AT3G58610.3	ketol-acid reductoisomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10301635	10307477	-
GWHAAZE00000008	mRNA	10301635	10307477	-
GWHAAZE00000008	exon	10301635	10302003	-
GWHAAZE00000008	exon	10302300	10302455	-
GWHAAZE00000008	exon	10302631	10302798	-
GWHAAZE00000008	exon	10303264	10303403	-
GWHAAZE00000008	exon	10305098	10305215	-
GWHAAZE00000008	exon	10305313	10305540	-
GWHAAZE00000008	exon	10305788	10305928	-
GWHAAZE00000008	exon	10306045	10306110	-
GWHAAZE00000008	exon	10306998	10307090	-
GWHAAZE00000008	exon	10307187	10307477	-
GWHAAZE00000008	CDS	10307187	10307477	-
GWHAAZE00000008	CDS	10306998	10307090	-
GWHAAZE00000008	CDS	10306045	10306110	-
GWHAAZE00000008	CDS	10305788	10305928	-
GWHAAZE00000008	CDS	10305313	10305540	-
GWHAAZE00000008	CDS	10305098	10305215	-
GWHAAZE00000008	CDS	10303264	10303403	-
GWHAAZE00000008	CDS	10302631	10302798	-
GWHAAZE00000008	CDS	10302300	10302455	-
GWHAAZE00000008	CDS	10301635	10302003	-

Transcript Sequence
>GWHTAAZE026840 ATGGCGGCGGTGACCTCCTTCTCTCCGTCAGTGGCTGTTGCCTCGTCGAACAACCTGAAAACAGACACCAAAACCCTAGGTGGTCTCAATGTAGGCTTTCTCTCTTCTACTTCTTCCAACACTGCCCTGTATTCTCTCAGAGCTCGACCTTTAACCACCAATGGCTCTGGTTCTGGCTCAGCCATCGGGTCTTGTATGGTATCCGTTCCTGATATTAAGCCTCTGACTCTCCTTGATTTTGACACATCCGTTTTTAAAAAGGAGAAGATCAGCCTTGCTGGTTACGACGAGTATATTGTGAGAGGAGGCAGGGATTTGTTCCATTTATTGCCAGATGCCTTGAAGGGTATTAAGCAGATTGGTGTTATTGGTTGGGGTTCTCAGGGCCCTGCGCAAGCTCAGAATTTAAGGGATTCTCTTGCTGAAGCAAAATCTGATATTGTGGTCAAGATAGGCTTAAGGAAGGGTTCTCGATCATTTGCTGAGGCACGTGCTGCTGGCTTTACTGAAGAGAATGGGACCCTGGGAGATATTTGGGAGACTATTTCAGGCAGTGACTTAGTCTTGCTATTGATTTCTGATGCAGCCCAGGCTGATAATTATGAGAAAGTGCTGTCACACATGAAGCCAAACAGCATACTCGGCCTCTCCCATGGTTTCCTTTTGGGCCATTTGCAGTCAGTAGGCCTTGATTTCCCCAAGAACATCAGTGTGATAGCTGTGTGTCCTAAGGGGATGGGCCCGTCCGTAAGGAGATTGTATGTGCAAGGAAAGGAGATCAATGGTGCAGGAATCAATTCAAGTTTCGCTGTTCACCAGGATGTTGATGGTAGGGCCACAGATGTTGCCCTGGGATGGTCAGTCGCCCTTGGTTCACCTTTTACTTTTGCTACTACTCTCGAGCAGGAGTACAAGAGTGACATATTCGGGGAGCGAGGCATTTTACTTGGTGCCGTGCATGGTATCGTGGAGTCATTATTCAGGAGATACACTGAAGATGGAATGAGCGAAGATCTGGCTTACAAGAATACTGTGGAGTGCATAACAGGGACAATATCGAGGACCATCTCAGCAAAGGGCATGTTGGCTGTGTACAATTCATTGTCACAAGATGGTAAAAAGGAATTCGAAGCTGCATATAGTGCTTCATATTATCCATGCATGGACATCTTATATGAGTGCTATGAAGATGTAGCCACTGGTAGCGAGATCCGGAGTGTTGTCTTAGCTGGGCGCCGATTTTACGAAAAGGATGGCTTACCAGCTTTCCCAATGGGAAAAATCGATCAGACTCGGATGTGGAAAGTAGGGGAACGAGTACGTTCATCACGACCAGCGGGTGATTTAGGTCCATTATATCCTTTCACTGCAGGTGTTTATGTCGCATTGATGATGGCCCAGATTGAGATTCTGAGGAAGAAGGGACACTCGTACTCGGAGATAATTAATGAGAGTTTGATCGAATCCGTGGATTCTTTGAATCCTTTCATGCATGCTCGTGGAGTTTCATTTATGGTTGATAACTGTTCGACAACAGCACGTCTAGGATCAAGGAAGTGGGCCCCACGCTTTGATTACATTCTCACCCAACAGGCATTGGTGGCAGTGGACAATGGCACCCCCATCAACCGGGACCTAATCAGCAACTTTCTGTCAGATCCCGTTCACGGAGCCGTTGAAGTCTGTGCCCAGTTGAGACCTACTGTTGACATTTCTGTCCCTGCGGATGCTGATTTCGTTCGTCCAGAGCTGCGCCAATCTAGCAACTAA

Network for GWHGAAZE026806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07991.13	IlvN	118	292	7.10E-31
PF01450.20	IlvC	301	445	1.60E-33
PF01450.20	IlvC	458	527	2.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00053	ilvC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Valine, leucine and isoleucine biosynthesis	map00290
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009082	biological_process	branched-chain amino acid biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004455	molecular_function	ketol-acid reductoisomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	243.362
	SRR3591706	second leaf	123.802
	SRR3591707	mature leaf	65.951
	SRR3591708	Shoot apex	220.547
	SRR3591709	Stem	114.032
	SRR3591710	White floral bud	82.356
	SRR3591711	White flower	91.152
	SRR3591712	Green floral bud	164.318
	SRR3591713	Yellow flower	65.340
SRP173429	SRR8316895	Juvenile bud stage	112.035
	SRR8316896	Juvenile bud stage	145.151
	SRR8316897	Juvenile bud stage	71.866
	SRR8316894	Third green stage	58.830
	SRR8316900	Third green stage	205.905
	SRR8316901	Third green stage	163.437
	SRR8316898	Complete white stage	34.558
	SRR8316899	Complete white stage	117.566
	SRR8316903	Complete white stage	48.634
	SRR8316902	Silver flowering stage	30.393
	SRR8316904	Silver flowering stage	34.836
	SRR8316905	Silver flowering stage	21.161
	SRR8316906	Gold flowering stage	68.436
	SRR8316907	Gold flowering stage	72.429
	SRR8316908	Gold flowering stage	80.286
SRP132670	SRR6706286	Control	164.239
	SRR6706287	Light intensity 50%	162.128
	SRR6706288	Light intensity 20%	180.976
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	108.102
	CNS0095593	Slightly white alabastrum(diploid) 2	117.929
	CNS0095594	Slightly white alabastrum(diploid) 3	104.659
	CNS0095595	Whole white alabastrum(diploid) 2	96.697
	CNS0095596	Whole white alabastrum(diploid) 3	118.725
	CNS0095597	Whole white alabastrum(diploid) 4	71.942
	CNS0095598	Silvery flower (diploied) 1	82.110
	CNS0095599	Silvery flower (diploied) 2	68.318
	CNS0095600	Silvery flower (diploied) 3	77.112
	CNS0095601	Golden flower (diploid) 1	62.677
	CNS0095602	Golden flower (diploid) 2	81.396
	CNS0095603	Golden flower (diploid) 3	78.615
	CNS0095604	Slightly white alabastrum(tetraploid) 1	143.503
	CNS0095605	Slightly white alabastrum(tetraploid) 2	126.686
	CNS0095606	Slightly white alabastrum(tetraploid) 3	228.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	78.179
	CNS0095608	Whole white alabastrum(tetraploid) 2	68.704
	CNS0095609	Whole white alabastrum(tetraploid) 3	200.413
	CNS0095610	Silvery flower (tetraploid) 1	92.293
	CNS0095611	Silvery flower (tetraploid) 2	93.457
	CNS0095612	Silvery flower (tetraploid) 3	74.834
	CNS0095613	Golden flower (tetraploid) 1	54.324
	CNS0095614	Golden flower (tetraploid) 2	85.687
	CNS0095615	Golden flower (tetraploid) 3	35.851
CRA001975	CRR073297	Stem 1	222.092
	CRR073298	Stem 2	198.099
	CRR073299	Stem 3	281.075
	CRR073300	Leaf 1	194.238
	CRR073301	Leaf 2	190.014
	CRR073302	Leaf 3	269.109
	CRR073303	Juvenile bud 1	193.211
	CRR073304	Juvenile bud 2	159.214
	CRR073305	Juvenile bud 3	178.975
	CRR073306	Third green 1	45.969
	CRR073307	Third green 2	36.175
	CRR073308	Third green 3	38.322
	CRR073309	Second white 1	35.154
	CRR073310	Second white 2	25.588
	CRR073311	Second white 3	22.072
	CRR073312	Silver flowering 1	25.295
	CRR073313	Silver flowering 2	38.613
	CRR073314	Silver flowering 3	33.236
	CRR073315	Gold flowering 1	80.187
	CRR073316	Gold flowering 2	120.863
	CRR073317	Gold flowering 3	78.282
	CRR073318	Tawny withering 1	142.159
	CRR073319	Tawny withering 2	97.727
	CRR073320	Tawny withering 3	137.396