Detail information of GWHGAAZE026814


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006348844.13.91973E-84PREDICTED: E3 ubiquitin-protein ligase ATL41-like [Solanum tuberosum]
Swissprottr|Q9SLC3|ATL41_ARATH5E-54E3 ubiquitin-protein ligase ATL41
trEMBLtr|M1AJX0|M1AJX0_SOLTU1E-84Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024326}
TAIR10AT2G42360.12E-23RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1042241610423147+
GWHAAZE00000008mRNA1042241610423147+
GWHAAZE00000008exon1042241610423147+
GWHAAZE00000008CDS1042241610423147+
Transcript Sequence

Network for GWHGAAZE026814

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21071506.10E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.170
SRR3591707mature leaf2.536
SRR3591708Shoot apex0.970
SRR3591709Stem1.040
SRR3591710White floral bud3.262
SRR3591711White flower3.924
SRR3591712Green floral bud1.991
SRR3591713Yellow flower16.677
SRP173429 SRR8316895Juvenile bud stage 0.633
SRR8316896Juvenile bud stage 1.826
SRR8316897Juvenile bud stage 0.794
SRR8316894Third green stage 0.044
SRR8316900Third green stage 0.249
SRR8316901Third green stage 1.688
SRR8316898Complete white stage 0.790
SRR8316899Complete white stage 2.460
SRR8316903Complete white stage 0.905
SRR8316902Silver flowering stage2.794
SRR8316904Silver flowering stage3.370
SRR8316905Silver flowering stage1.531
SRR8316906Gold flowering stage 20.255
SRR8316907Gold flowering stage 13.258
SRR8316908Gold flowering stage 34.005
SRP132670SRR6706286Control4.386
SRR6706287Light intensity 50%2.278
SRR6706288Light intensity 20%1.117
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.139
CNS0095593Slightly white alabastrum(diploid) 20.232
CNS0095594Slightly white alabastrum(diploid) 31.258
CNS0095595Whole white alabastrum(diploid) 20.461
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 11.786
CNS0095599Silvery flower (diploied) 20.843
CNS0095600Silvery flower (diploied) 32.242
CNS0095601Golden flower (diploid) 15.027
CNS0095602Golden flower (diploid) 24.875
CNS0095603Golden flower (diploid) 34.473
CNS0095604Slightly white alabastrum(tetraploid) 10.047
CNS0095605Slightly white alabastrum(tetraploid) 20.079
CNS0095606Slightly white alabastrum(tetraploid) 31.443
CNS0095607Whole white alabastrum(tetraploid) 10.198
CNS0095608Whole white alabastrum(tetraploid) 20.405
CNS0095609Whole white alabastrum(tetraploid) 30.631
CNS0095610Silvery flower (tetraploid) 11.374
CNS0095611Silvery flower (tetraploid) 20.597
CNS0095612Silvery flower (tetraploid) 33.009
CNS0095613Golden flower (tetraploid) 19.014
CNS0095614Golden flower (tetraploid) 210.712
CNS0095615Golden flower (tetraploid) 32.258
CRA001975CRR073297Stem 10.861
CRR073298Stem 20.704
CRR073299Stem 30.420
CRR073300Leaf 10.546
CRR073301Leaf 22.090
CRR073302Leaf 30.382
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.154
CRR073305Juvenile bud 31.235
CRR073306Third green 12.349
CRR073307Third green 20.656
CRR073308Third green 32.832
CRR073309Second white 14.933
CRR073310Second white 27.981
CRR073311Second white 34.872
CRR073312Silver flowering 146.543
CRR073313Silver flowering 246.558
CRR073314Silver flowering 353.221
CRR073315Gold flowering 11.405
CRR073316Gold flowering 22.745
CRR073317Gold flowering 37.489
CRR073318Tawny withering 187.311
CRR073319Tawny withering 2130.682
CRR073320Tawny withering 323.631