Gene detail

Detail information of GWHGAAZE026833

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043703.1	6.6278E-130	NAC domain containing protein 73 [Theobroma cacao]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	2E-66	NAC domain-containing protein 8
trEMBL	tr\|A0A061E3C0\|A0A061E3C0_THECC	2E-130	NAC domain containing protein 73 {ECO:0000313\|EMBL:EOX99534.1}
TAIR10	AT4G28500.1	2E-90	NAC domain containing protein 73

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10720152	10721774	-
GWHAAZE00000008	mRNA	10720152	10721774	-
GWHAAZE00000008	exon	10720152	10720606	-
GWHAAZE00000008	exon	10721260	10721449	-
GWHAAZE00000008	exon	10721691	10721774	-
GWHAAZE00000008	CDS	10721691	10721774	-
GWHAAZE00000008	CDS	10721260	10721449	-
GWHAAZE00000008	CDS	10720152	10720606	-

Transcript Sequence
>GWHTAAZE026867 ATGACTGTCATTGGTGACAACAAGAAAGACAATACAGCAATAACTTGTCCTTCTTGTGGTCATCAAATTCAATGTCTAGAAAAGGCTGGAATTCATGACTTGCCGGGGCTACCGGCTGGAGTGAAGTTTGATCCGAGCGATCAAGAGCTTTTAGAACATTTGGACGCAAAGGCGTGTCTGGATGCCCACAAGCTTCATCCCCTTATTGATGAGTTCATCCCTACACTTGAAGGGGAGAATGGTATTTGCTACACTCACCCTGAGAAATTACCAGGAGTAAGCAAAGATGGCATGGTCCGACATTTCTTCCATAGACCTTCAAAAGCATACACTACTGGAACCCGTAAACGAAGGAAAGTCCACACAGACATTGATGGAAGCGAAACCCGATGGCACAAAACTGGAAAAACCAGGGCAGTTTTTGTTAAAGACAAAGTGAAAGGGTACAAGAAGATACTTGTGCTCTACACCAACTATGGGAAACAAAGAAAACCTGAAAAAACGAATTGGGTGATGCATCAATACCATATGGGCAACAACGAGGACGAAAAAGAAGGGGAGTTAGTGGTTTCGAAGATTTTCTACCAAACGCAGCCTAGACAGTGTGGTTCTGTTCCCAAGGAATCGCGTATTTCAAATGGTCGAACCGGACATGAGGGTCCTCGTCCTGCCTTCTACTGTAACCCATCTTTTATCTCATTTGGTCAGCACGAGGACTCGTGTGCCTAA

Network for GWHGAAZE026833

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	38	177	1.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.701
	SRR3591706	second leaf	7.850
	SRR3591707	mature leaf	1.640
	SRR3591708	Shoot apex	4.411
	SRR3591709	Stem	60.183
	SRR3591710	White floral bud	2.598
	SRR3591711	White flower	1.626
	SRR3591712	Green floral bud	6.704
	SRR3591713	Yellow flower	0.172
SRP173429	SRR8316895	Juvenile bud stage	21.460
	SRR8316896	Juvenile bud stage	9.246
	SRR8316897	Juvenile bud stage	4.180
	SRR8316894	Third green stage	2.411
	SRR8316900	Third green stage	3.093
	SRR8316901	Third green stage	3.056
	SRR8316898	Complete white stage	1.159
	SRR8316899	Complete white stage	1.910
	SRR8316903	Complete white stage	0.563
	SRR8316902	Silver flowering stage	0.094
	SRR8316904	Silver flowering stage	0.092
	SRR8316905	Silver flowering stage	0.181
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.138
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.760
	SRR6706287	Light intensity 50%	2.942
	SRR6706288	Light intensity 20%	2.830
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.509
	CNS0095593	Slightly white alabastrum(diploid) 2	3.877
	CNS0095594	Slightly white alabastrum(diploid) 3	5.952
	CNS0095595	Whole white alabastrum(diploid) 2	2.285
	CNS0095596	Whole white alabastrum(diploid) 3	0.966
	CNS0095597	Whole white alabastrum(diploid) 4	0.577
	CNS0095598	Silvery flower (diploied) 1	0.478
	CNS0095599	Silvery flower (diploied) 2	0.236
	CNS0095600	Silvery flower (diploied) 3	0.214
	CNS0095601	Golden flower (diploid) 1	0.733
	CNS0095602	Golden flower (diploid) 2	0.220
	CNS0095603	Golden flower (diploid) 3	0.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.126
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.586
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.062
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.297
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.227
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.707
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.032
	CNS0095612	Silvery flower (tetraploid) 3	0.431
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.120
CRA001975	CRR073297	Stem 1	37.768
	CRR073298	Stem 2	17.649
	CRR073299	Stem 3	15.417
	CRR073300	Leaf 1	2.978
	CRR073301	Leaf 2	2.236
	CRR073302	Leaf 3	3.749
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.298
	CRR073305	Juvenile bud 3	0.462
	CRR073306	Third green 1	0.192
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.286
	CRR073316	Gold flowering 2	0.850
	CRR073317	Gold flowering 3	0.082
	CRR073318	Tawny withering 1	12.894
	CRR073319	Tawny withering 2	7.907
	CRR073320	Tawny withering 3	19.126