Gene detail

Detail information of GWHGAAZE026835

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15870.1	1.55945E-97	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SIV3\|GLK1_ARATH	8E-47	Transcription activator GLK1
trEMBL	tr\|A0A068V513\|A0A068V513_COFCA	6E-98	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15870.1}
TAIR10	AT2G20570.1	4E-27	GBF's pro-rich region-interacting factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10781458	10784828	+
GWHAAZE00000008	mRNA	10781458	10784828	+
GWHAAZE00000008	exon	10781458	10781907	+
GWHAAZE00000008	exon	10783246	10783605	+
GWHAAZE00000008	exon	10783690	10783752	+
GWHAAZE00000008	exon	10784305	10784424	+
GWHAAZE00000008	exon	10784685	10784828	+
GWHAAZE00000008	CDS	10781458	10781907	+
GWHAAZE00000008	CDS	10783246	10783605	+
GWHAAZE00000008	CDS	10783690	10783752	+
GWHAAZE00000008	CDS	10784305	10784424	+
GWHAAZE00000008	CDS	10784685	10784828	+

Transcript Sequence
>GWHTAAZE026869 ATGCTGGCTGTGTCGCCGTTCAGAAGGGAGGGGGAAACTGAGAATACTTTTCCGATGGGGGAAATTGGAGACGAATTCCCGGACTTTTGCGGCGATAATTTGCTAGACAGTATTGATTTTGACGAGCTATTTGTCGGAATTGAAATTGACGGTGATGTGTTGCCGGATTTGGAGGTGGACGGTGGTGATTTCTCGGCCAGTGGGGGTGAAGATTCGTCGGAGATGAATACTTTTACGTCTGTTTCATTTGAGAAAACTGAGGAGGATAATAAGGTTTCAGGTTCAGGCTCTGCAGGCTCTGCAGGCTCTAGTTTGATTCAAGAAGAAGAAATTGTGAGTAAGAGAGAGAATGAATCTGATGCGGTAGGAATTAATTCGTCACGAAAGGAAGGTCACGAGAAGCGAAAAAAATCAAAGAATCGTCATGGCAATGGCAAGAGGAAAGTAAAGAAATATAGATCGCATCGAAAACATTTAATAGCACGAGAAGCAGAGGCGGCAAGCTGGAGCCATAAGCGGCAGATGTATGGTGGCGGCAGTGGTAGTGGTGGAGGAATGAAGAGAGAAATGACGAATAATAATAGTCTATGGCTTGGAGTTGCACCCACCATGGGCTTTCCTCCAATGGCACCACCACCGCCCATAATGCCACATCATTTTAGACCCTTGCATGTATGGGGTCATCCCCATGTTGACCGGTCCTTAGGCCGCATTTGGCCTAAACAAATTGTCCCTTCACCACCACCACCACATTTTGCTCATCCTCCACCACCACCGGGTTCTTCCTTTTGGCATGCGCATCACCAACGTGTTCCAAATTCCTTTACACCAGGAACACCTTATTTCCCACCTACACCGCAATTAGCGCCATCGAGATTTCCAAATCAACCGGTGCAAGGGATTCCAACTCATGCCGTGTACAAAGTAGACGCCGGCAGTGGTGCCCCGTTGACTAATAGCCCCACCGGCCCACCATTGGTTGACTTTCATCCGTCAAAGGAGAGCATAGATGCAGCGATAGGAGATGTATTGTCAGAGCCATGGCGACCACTTCCTCTTGGACTGAACCCTCCTTGTCTTGATAGTGTAATGGTGGAACTTAACCTTCAAGGCATTCCAAAAATACCCCCTTGCTAG

Network for GWHGAAZE026835

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.419
	SRR3591706	second leaf	15.282
	SRR3591707	mature leaf	32.757
	SRR3591708	Shoot apex	12.878
	SRR3591709	Stem	8.449
	SRR3591710	White floral bud	1.073
	SRR3591711	White flower	1.211
	SRR3591712	Green floral bud	1.770
	SRR3591713	Yellow flower	0.263
SRP173429	SRR8316895	Juvenile bud stage	7.601
	SRR8316896	Juvenile bud stage	8.677
	SRR8316897	Juvenile bud stage	4.917
	SRR8316894	Third green stage	2.144
	SRR8316900	Third green stage	4.687
	SRR8316901	Third green stage	4.803
	SRR8316898	Complete white stage	0.431
	SRR8316899	Complete white stage	2.345
	SRR8316903	Complete white stage	0.851
	SRR8316902	Silver flowering stage	0.438
	SRR8316904	Silver flowering stage	0.461
	SRR8316905	Silver flowering stage	0.056
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.380
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	6.544
	SRR6706287	Light intensity 50%	6.400
	SRR6706288	Light intensity 20%	6.272
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.081
	CNS0095593	Slightly white alabastrum(diploid) 2	6.441
	CNS0095594	Slightly white alabastrum(diploid) 3	9.343
	CNS0095595	Whole white alabastrum(diploid) 2	9.427
	CNS0095596	Whole white alabastrum(diploid) 3	7.334
	CNS0095597	Whole white alabastrum(diploid) 4	3.520
	CNS0095598	Silvery flower (diploied) 1	9.689
	CNS0095599	Silvery flower (diploied) 2	6.484
	CNS0095600	Silvery flower (diploied) 3	2.315
	CNS0095601	Golden flower (diploid) 1	6.108
	CNS0095602	Golden flower (diploid) 2	6.248
	CNS0095603	Golden flower (diploid) 3	5.986
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.718
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.293
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.181
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.179
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.908
	CNS0095610	Silvery flower (tetraploid) 1	1.454
	CNS0095611	Silvery flower (tetraploid) 2	1.654
	CNS0095612	Silvery flower (tetraploid) 3	0.284
	CNS0095613	Golden flower (tetraploid) 1	0.880
	CNS0095614	Golden flower (tetraploid) 2	1.064
	CNS0095615	Golden flower (tetraploid) 3	0.351
CRA001975	CRR073297	Stem 1	3.373
	CRR073298	Stem 2	2.261
	CRR073299	Stem 3	2.356
	CRR073300	Leaf 1	1.448
	CRR073301	Leaf 2	3.916
	CRR073302	Leaf 3	2.754
	CRR073303	Juvenile bud 1	0.790
	CRR073304	Juvenile bud 2	0.140
	CRR073305	Juvenile bud 3	1.120
	CRR073306	Third green 1	0.728
	CRR073307	Third green 2	1.761
	CRR073308	Third green 3	1.401
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.028
	CRR073312	Silver flowering 1	0.042
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.503
	CRR073316	Gold flowering 2	2.040
	CRR073317	Gold flowering 3	0.868
	CRR073318	Tawny withering 1	3.842
	CRR073319	Tawny withering 2	2.096
	CRR073320	Tawny withering 3	3.621