Gene detail

Detail information of GWHGAAZE026836

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007198928.1	hypothetical protein PRUPE_ppa001162mg [Prunus persica]
Swissprot	tr\|Q9SIV2\|PSD2A_ARATH	26S proteasome non-ATPase regulatory subunit 2 homolog A
trEMBL	tr\|M5VGN0\|M5VGN0_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00127.1}
TAIR10	AT2G20580.1	26S proteasome regulatory subunit S2 1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10806666	10815969	+
GWHAAZE00000008	mRNA	10806666	10815969	+
GWHAAZE00000008	exon	10806666	10806779	+
GWHAAZE00000008	exon	10806876	10806976	+
GWHAAZE00000008	exon	10807453	10807573	+
GWHAAZE00000008	exon	10807665	10807724	+
GWHAAZE00000008	exon	10807916	10807983	+
GWHAAZE00000008	exon	10808390	10808432	+
GWHAAZE00000008	exon	10808838	10808903	+
GWHAAZE00000008	exon	10809139	10809177	+
GWHAAZE00000008	exon	10809261	10809343	+
GWHAAZE00000008	exon	10809494	10809608	+
GWHAAZE00000008	exon	10809857	10809931	+
GWHAAZE00000008	exon	10810289	10810447	+
GWHAAZE00000008	exon	10811400	10811507	+
GWHAAZE00000008	exon	10811592	10811696	+
GWHAAZE00000008	exon	10811955	10812095	+
GWHAAZE00000008	exon	10812461	10812565	+
GWHAAZE00000008	exon	10812777	10812998	+
GWHAAZE00000008	exon	10813239	10813352	+
GWHAAZE00000008	exon	10813468	10813662	+
GWHAAZE00000008	exon	10813757	10813816	+
GWHAAZE00000008	exon	10814654	10814853	+
GWHAAZE00000008	exon	10815496	10815604	+
GWHAAZE00000008	exon	10815712	10815969	+
GWHAAZE00000008	CDS	10806666	10806779	+
GWHAAZE00000008	CDS	10806876	10806976	+
GWHAAZE00000008	CDS	10807453	10807573	+
GWHAAZE00000008	CDS	10807665	10807724	+
GWHAAZE00000008	CDS	10807916	10807983	+
GWHAAZE00000008	CDS	10808390	10808432	+
GWHAAZE00000008	CDS	10808838	10808903	+
GWHAAZE00000008	CDS	10809139	10809177	+
GWHAAZE00000008	CDS	10809261	10809343	+
GWHAAZE00000008	CDS	10809494	10809608	+
GWHAAZE00000008	CDS	10809857	10809931	+
GWHAAZE00000008	CDS	10810289	10810447	+
GWHAAZE00000008	CDS	10811400	10811507	+
GWHAAZE00000008	CDS	10811592	10811696	+
GWHAAZE00000008	CDS	10811955	10812095	+
GWHAAZE00000008	CDS	10812461	10812565	+
GWHAAZE00000008	CDS	10812777	10812998	+
GWHAAZE00000008	CDS	10813239	10813352	+
GWHAAZE00000008	CDS	10813468	10813662	+
GWHAAZE00000008	CDS	10813757	10813816	+
GWHAAZE00000008	CDS	10814654	10814853	+
GWHAAZE00000008	CDS	10815496	10815604	+
GWHAAZE00000008	CDS	10815712	10815969	+

Transcript Sequence
>GWHTAAZE026870 ATGGCGCCGGATCAGAACAGTGCCGGCGGCAGCGGATCCACCCGAGATGATTCGTCCGTCAAAGTTCCGGCCAAGGACCCCAAGAAGAAAGACGACAAAAAGGACGAAGATCTCTCGGAAGAGGATTTGGCGTTAAAGCAGAAATTGGAGTTGTACGTAGAGAGAGTTCAGGATTCGGATCCGGGATTACAGAAATTTGCACTGGAGAGCATGAGGCAAGAAATTAGGACCTCAACAAGCTCTATGACTTCAGTTCCGAAGCCATTGAAGTTCCTGCGTCAGCATTATGGAACTCTCAAAGCATTTTATGAAACAATGGCGGAGTCAGATGTGAAGAAATTACTTGCAGATATACTATCAGTGTTGGCCTTGACCATGTCTGCAGAGGGAGAAAGGGAAAGCTTGAAGTATAGGCTGTTGGGCTCTGAAGGTGATATTGGTTCATGGGGTCATGAGTATGTCAGGAACTTGGCTGGAGAAATTGGACAAGAGTATCTAAAACGACAGAGTGAAGAGGCCCCAATTGATAATATAATGAAGCTTGTACAGCAAATTGTTGCTTTTCACATGAAGCACAATGCTGAACCCGAGGCTGTGGATCTTTTGATGGAGGTTGAAGATCTTGATCTGTTGGTGGAGCACGTGGACAGCACAAACTATAAAAGAACGTGCCTCTACCTAAAAAGTTCAGCAAGATACCTTCCTAATCCAGATGACCAGTTGGTTTTGGATATCGCATACATGATCTATATGAAATTTCAAGAATTTCCATATGCACTTCAGATTGCTTTGTTGCTCGACAACATGCAGTATGTGAAGCAGATTTTTATCTCTTGTGCTGATCTTCTTCAAAAGAAGCAATTTTGTTACATGCTTGCTCGACATGGAATAACTTTTGAGCTTGATGAAGAGATGTGTTCAGATGATGAAGAAAGGGAGGCATTGCAAGAAATCATCAACAATACTCAATTAAGTGAAGGGTATCTTACGCTTGCTCGTGATATTGAGGTTATGGAGCCTAAGTCTCCTGAGGATATTTATAAGGCACATTTGCTTGATGGCCGGGCTAGTGCTGGTGCTAGTGTTGATTCTGCCAGACAGAACTTGGCAGCAACATTTGTGAATGCCTTTGTAAATGCTGGCTTTGGTCAGGATAAGTTGATGACGGTCCCATCAGAGGCCTCAAGTGGCGGTGCATCAGGAAACTGGCTTTTTAAGAACAAAGAACACGGGAAGGCCAGTGCTGCAGCAAGTCTGGGTATGGTCTTGCTTTGGGATGTTGACTCTGGACTTGCCCAACTCGATAAGTGCTTCCACAGCAACGACAACCATGTCATTTCAGGGGCCCTACTGGGAGTTGGGATTGTCAACTGTGGCATCAAGAATGATTGCGAACCTGCGTTGGCACTTCTTGCTGATTATATTGATAAAGAAGACCCTTCTACTAGAATTGGTGCGGTAATGGGCTTGGGCCTTGCATATGCAGGCTCTCAGAATGAACAGATCCGTAGCAAATTGACTCCAATTCTTGGAGATGCAAAGGCACCGCTTGATGTAATTGCATTTACTGCAATCTCACTGGGCTTGGTATATGTGGGTTCGTGTAACGAAGAGGTTGCGCAGGCTATAATATTTGCATTAATGGATCGAAGCGAGTCAGAGTTGGGTGAGCCCCTCACCCGACTTCTGCCTCTAGGACTTGGCCTTCTTTATCTCGGGAAACAGGAAAGTGTGGAAGCCACAGCTGAGGTTTCGAAGACTTTCAATGAGAAAATCAGGAAGTATTGTGACATGACTCTGCTTTCTTGTGCCTATGCTGGAACAGGGAACGTATTAAAGTGTGCCCAACATCTTGAGAAGGGTGAAACATACCAGGGTCCAGCTGTACTTGGAATCGCAATGGTAGCAATGGCTGAAGAACTTGGTCTTGAGATGGCAATTCGCTCATTAGAGCATCTTCTACAGTACGGAGAGCAGAATATTAGAAGGGCAGTTCCTTTGGCTCTTGGTCTCCTATGCATATCAAACCCTAAGGTGAACATTATGGACACATTAAGCAGACTTAGTCATGATGCGGATACAGAAGTAGCAATGGCTGCAGTAATCTCCTTGGGATTGATAGGTGCTGGAACCAACAATGCTAGAATTGCTGGCATGCTTCGCAATCTTTCAAGTTACTACTACAAAGAAGCCAGCCTTCTGTTCTGTGTGAGAATTGCGCAAGGTCTTGTACACATGGGGAAGGGGCTGATGACTCTTTCTCCTTATCATTCTGAGCGGTTCTTACTGTCCCCGACTGCACTGGCTGGAATTTTAACATTGCTGCATGCGTGCCTCGACATGAAAACCATTATCTTGGGGAAATACCATTACGTTCTTTACTTCCTTGTTTTGGCAATGCAGCCGAGAATGTTGTTGACTGTGGACGAAAATCTGAAGCCTCTGTCGGTCCCTGTGCGGGTGGGTCAGGCTGTTGACGTTGTTGGACAAGCGGGTCGACCCAAGACCATCACGGGTTTCCAGACACATTCCACCCCTGTTCTTTTGGCTGCTGGTGATAGGGCTGAACTTGCAACTGAGAAGTACCCTACTCTTCTCTACAAACATCATGTCGTTTTAATGTTTTTAGGTGCATGCGTGTTCCATGCGTTTTTCAACTAA

Network for GWHGAAZE026836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17781.2	RPN1_RPN2_N	49	351	3.50E-123
PF01851.23	PC_rep	448	482	0.00024
PF01851.23	PC_rep	485	512	8.00E-05
PF18051.2	RPN1_C	828	863	1.00E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03028	PSMD2, RPN1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0042176	biological_process	regulation of protein catabolic process
GO:0000502	cellular_component	proteasome complex
GO:0030234	molecular_function	enzyme regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	174.162
	SRR3591706	second leaf	79.640
	SRR3591707	mature leaf	60.288
	SRR3591708	Shoot apex	120.633
	SRR3591709	Stem	120.601
	SRR3591710	White floral bud	145.450
	SRR3591711	White flower	217.849
	SRR3591712	Green floral bud	140.875
	SRR3591713	Yellow flower	180.706
SRP173429	SRR8316895	Juvenile bud stage	96.840
	SRR8316896	Juvenile bud stage	134.936
	SRR8316897	Juvenile bud stage	61.975
	SRR8316894	Third green stage	54.719
	SRR8316900	Third green stage	153.747
	SRR8316901	Third green stage	148.438
	SRR8316898	Complete white stage	61.120
	SRR8316899	Complete white stage	159.859
	SRR8316903	Complete white stage	97.782
	SRR8316902	Silver flowering stage	80.974
	SRR8316904	Silver flowering stage	119.642
	SRR8316905	Silver flowering stage	53.069
	SRR8316906	Gold flowering stage	208.582
	SRR8316907	Gold flowering stage	213.654
	SRR8316908	Gold flowering stage	226.745
SRP132670	SRR6706286	Control	133.698
	SRR6706287	Light intensity 50%	144.433
	SRR6706288	Light intensity 20%	155.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	84.685
	CNS0095593	Slightly white alabastrum(diploid) 2	80.981
	CNS0095594	Slightly white alabastrum(diploid) 3	72.780
	CNS0095595	Whole white alabastrum(diploid) 2	80.371
	CNS0095596	Whole white alabastrum(diploid) 3	76.865
	CNS0095597	Whole white alabastrum(diploid) 4	70.941
	CNS0095598	Silvery flower (diploied) 1	79.662
	CNS0095599	Silvery flower (diploied) 2	79.283
	CNS0095600	Silvery flower (diploied) 3	196.907
	CNS0095601	Golden flower (diploid) 1	73.131
	CNS0095602	Golden flower (diploid) 2	163.778
	CNS0095603	Golden flower (diploid) 3	162.816
	CNS0095604	Slightly white alabastrum(tetraploid) 1	109.655
	CNS0095605	Slightly white alabastrum(tetraploid) 2	89.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	184.290
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.382
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	157.281
	CNS0095610	Silvery flower (tetraploid) 1	219.702
	CNS0095611	Silvery flower (tetraploid) 2	199.469
	CNS0095612	Silvery flower (tetraploid) 3	214.140
	CNS0095613	Golden flower (tetraploid) 1	117.815
	CNS0095614	Golden flower (tetraploid) 2	187.306
	CNS0095615	Golden flower (tetraploid) 3	217.683
CRA001975	CRR073297	Stem 1	154.804
	CRR073298	Stem 2	146.024
	CRR073299	Stem 3	164.876
	CRR073300	Leaf 1	171.347
	CRR073301	Leaf 2	159.796
	CRR073302	Leaf 3	158.416
	CRR073303	Juvenile bud 1	164.882
	CRR073304	Juvenile bud 2	139.655
	CRR073305	Juvenile bud 3	189.973
	CRR073306	Third green 1	125.030
	CRR073307	Third green 2	96.400
	CRR073308	Third green 3	112.226
	CRR073309	Second white 1	175.396
	CRR073310	Second white 2	175.431
	CRR073311	Second white 3	171.781
	CRR073312	Silver flowering 1	161.203
	CRR073313	Silver flowering 2	174.615
	CRR073314	Silver flowering 3	158.240
	CRR073315	Gold flowering 1	63.961
	CRR073316	Gold flowering 2	89.397
	CRR073317	Gold flowering 3	72.552
	CRR073318	Tawny withering 1	123.068
	CRR073319	Tawny withering 2	94.850
	CRR073320	Tawny withering 3	134.899