Gene detail

Detail information of GWHGAAZE026837

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100246.1	0	PREDICTED: DDB1- and CUL4-associated factor 13 [Sesamum indicum]
COG	YP_007121393.1	6E-26	WD40 repeat-containing protein
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	1E-13	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A068V5C6\|A0A068V5C6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15866.1}
TAIR10	AT4G28450.1	0	nucleotide binding;protein binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10818606	10825176	+
GWHAAZE00000008	mRNA	10818606	10825176	+
GWHAAZE00000008	exon	10818606	10818671	+
GWHAAZE00000008	exon	10818807	10818896	+
GWHAAZE00000008	exon	10819274	10819385	+
GWHAAZE00000008	exon	10819760	10819787	+
GWHAAZE00000008	exon	10820228	10820326	+
GWHAAZE00000008	exon	10820455	10820524	+
GWHAAZE00000008	exon	10820617	10820651	+
GWHAAZE00000008	exon	10820786	10820860	+
GWHAAZE00000008	exon	10820937	10821032	+
GWHAAZE00000008	exon	10821699	10821762	+
GWHAAZE00000008	exon	10822554	10822607	+
GWHAAZE00000008	exon	10822869	10822954	+
GWHAAZE00000008	exon	10823061	10823121	+
GWHAAZE00000008	exon	10823404	10823468	+
GWHAAZE00000008	exon	10823674	10823779	+
GWHAAZE00000008	exon	10823945	10824033	+
GWHAAZE00000008	exon	10824887	10825176	+
GWHAAZE00000008	CDS	10818606	10818671	+
GWHAAZE00000008	CDS	10818807	10818896	+
GWHAAZE00000008	CDS	10819274	10819385	+
GWHAAZE00000008	CDS	10819760	10819787	+
GWHAAZE00000008	CDS	10820228	10820326	+
GWHAAZE00000008	CDS	10820455	10820524	+
GWHAAZE00000008	CDS	10820617	10820651	+
GWHAAZE00000008	CDS	10820786	10820860	+
GWHAAZE00000008	CDS	10820937	10821032	+
GWHAAZE00000008	CDS	10821699	10821762	+
GWHAAZE00000008	CDS	10822554	10822607	+
GWHAAZE00000008	CDS	10822869	10822954	+
GWHAAZE00000008	CDS	10823061	10823121	+
GWHAAZE00000008	CDS	10823404	10823468	+
GWHAAZE00000008	CDS	10823674	10823779	+
GWHAAZE00000008	CDS	10823945	10824033	+
GWHAAZE00000008	CDS	10824887	10825049	+
GWHAAZE00000008	three_prime_UTR	10825050	10825176	+

Transcript Sequence
>GWHTAAZE026871 ATGAAAGTGAAGGTAATATCTCGTGCAACAGATGAATTCACTCGCGAACGAAGTCAGGACCTCCAGAGGGTGTTCCGAAATTTCGATCCAACACTTAGACCTCAAGAGAAGGCAGTGGAATATGTTAGAGCTCTTACCGCAGCTAAAAAGGAGAAGATGTTTGCAAGACCATTTGTTGGAGCAATGGATGGGCATATAGATGCTGTTTCATGTATGGCAAAGAACCCCAATCACTTAAAAGGGATATTTTCTGGTTCTATGGACGGAGATATTCGCCTTTGGGATATAGCTTCCAGACGAACGGTTCGTCAGTTTCCTGGTCACCAAGGTGCAGTACGTGGTTTAACAGCATCTACTGATGGTCGTATTCTTGTGTCTTGCGGAAGTGATTGCACTGTCAGACTCTGGAGTGTTCCTACTGCTACAGGTATGGATTTAGATGATTCATCTGATGACTCTACCAAGCCTTTGGCAGTTTATGTTTGGAAGAATGCATTCTGGGCTGTGGATCATCAGTGGGATGGTGACCTCTTTGCAACAGCTGGTGCTCAAGTAGATATATGGAACCATAATAGGTCCCAGCCGGTGAACAGTTTTGAATGGGGAAAAGATACAGTTATATCTGTTCGCTTCAATCCTGGAGAACCAAACATCCTGGCTACATCAGCTAGTGACCGTAGCATAACGATATATGATTTGCGAATGTCAACACCACTAAGAAAGATTATCATGAGGACGAAAACTAATTCTATATCTTGGAATCCTATGGAGCCAATGAATTTCACAGCTGCAAATGAAGATTGCAATTGTTACAGCTATGATTGTAGAAAATTGGATGAAGCTAAGTGTGTACATAAAGATCATGTTTCTGCAGTGATGGATATTGATTACTCGCCTACCGGTCGTGAATTTGTTACTGGATCTTACGATAGAACAGTGAGAATATTCCAATATAACGGTGGTCATAGTAGGGAAATTTACCATACAAAGAGAATGCAAAGGGTATTTGCCGTGAAGTTCAGCTGTGATGCAAGTTATGTCATCTCTGGGAGTGATGACACCAACCTTCGACTTTGGAAGGCTAGAGCATCTGAGCAATTGGGAGTTCTTCTTCCAAGGGAACGTAAAAGTCATGAATATCAAGAGGCTGTCATGAATCGGTACAAGCATCTTCCTGAAGTAAAACGTATTGCGAGGTATAGGCACTTGCCGAAACCAATATACAAGGCGGGAGTGCTTAGACGTATTATGACAGAAGCCGAGAGGAAGAAACAAGATAGGAGGAAGGCTCATAGTGCCCCTGGAAGCATGCCTAATCGCTCTATTCGTAAACAGAGAATCATTAAAGAAATCGAATAAATCGTGGTTATGTAATTTGAAAAACTAGGGTTGCTTTCCTGGCATAAAAAGTGCAAGAATGAAGAGTTCATGTGCAACAGTTTTGGTAAAAATCCAGCAGCTCCGTTTAATCTTACGTACTTCTGGA

Network for GWHGAAZE026837

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	62	95	0.0012
PF00400.33	WD40	100	137	2.00E-06
PF08662.12	eIF2A	206	321	0.00018
PF00400.33	WD40	329	360	0.00057
PF04158.15	Sof1	361	447	8.10E-29

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.054
	SRR3591706	second leaf	18.374
	SRR3591707	mature leaf	16.839
	SRR3591708	Shoot apex	32.737
	SRR3591709	Stem	26.378
	SRR3591710	White floral bud	27.301
	SRR3591711	White flower	50.533
	SRR3591712	Green floral bud	33.498
	SRR3591713	Yellow flower	48.164
SRP173429	SRR8316895	Juvenile bud stage	28.565
	SRR8316896	Juvenile bud stage	40.640
	SRR8316897	Juvenile bud stage	21.516
	SRR8316894	Third green stage	15.641
	SRR8316900	Third green stage	40.938
	SRR8316901	Third green stage	36.627
	SRR8316898	Complete white stage	12.443
	SRR8316899	Complete white stage	49.275
	SRR8316903	Complete white stage	14.734
	SRR8316902	Silver flowering stage	18.247
	SRR8316904	Silver flowering stage	22.878
	SRR8316905	Silver flowering stage	8.317
	SRR8316906	Gold flowering stage	32.457
	SRR8316907	Gold flowering stage	31.008
	SRR8316908	Gold flowering stage	40.273
SRP132670	SRR6706286	Control	26.537
	SRR6706287	Light intensity 50%	28.135
	SRR6706288	Light intensity 20%	32.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.101
	CNS0095593	Slightly white alabastrum(diploid) 2	33.016
	CNS0095594	Slightly white alabastrum(diploid) 3	35.733
	CNS0095595	Whole white alabastrum(diploid) 2	29.452
	CNS0095596	Whole white alabastrum(diploid) 3	29.990
	CNS0095597	Whole white alabastrum(diploid) 4	25.781
	CNS0095598	Silvery flower (diploied) 1	35.705
	CNS0095599	Silvery flower (diploied) 2	29.803
	CNS0095600	Silvery flower (diploied) 3	36.164
	CNS0095601	Golden flower (diploid) 1	25.004
	CNS0095602	Golden flower (diploid) 2	32.279
	CNS0095603	Golden flower (diploid) 3	29.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.363
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.717
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.155
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.068
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.927
	CNS0095610	Silvery flower (tetraploid) 1	47.697
	CNS0095611	Silvery flower (tetraploid) 2	43.771
	CNS0095612	Silvery flower (tetraploid) 3	33.652
	CNS0095613	Golden flower (tetraploid) 1	26.461
	CNS0095614	Golden flower (tetraploid) 2	39.623
	CNS0095615	Golden flower (tetraploid) 3	24.690
CRA001975	CRR073297	Stem 1	26.931
	CRR073298	Stem 2	24.295
	CRR073299	Stem 3	23.894
	CRR073300	Leaf 1	23.780
	CRR073301	Leaf 2	20.042
	CRR073302	Leaf 3	24.985
	CRR073303	Juvenile bud 1	25.306
	CRR073304	Juvenile bud 2	17.185
	CRR073305	Juvenile bud 3	22.517
	CRR073306	Third green 1	5.368
	CRR073307	Third green 2	6.481
	CRR073308	Third green 3	8.718
	CRR073309	Second white 1	10.856
	CRR073310	Second white 2	11.167
	CRR073311	Second white 3	10.618
	CRR073312	Silver flowering 1	6.632
	CRR073313	Silver flowering 2	6.114
	CRR073314	Silver flowering 3	7.888
	CRR073315	Gold flowering 1	8.689
	CRR073316	Gold flowering 2	16.237
	CRR073317	Gold flowering 3	7.928
	CRR073318	Tawny withering 1	19.439
	CRR073319	Tawny withering 2	19.060
	CRR073320	Tawny withering 3	21.804