Detail information of GWHGAAZE026846


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010657143.17.3855E-107PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Vitis vinifera]
Swissprottr|Q9FKW0|RNG1A_ARATH3E-84Putative E3 ubiquitin-protein ligase RING1a
trEMBLtr|F6H5F1|F6H5F1_VITVI3E-107Putative uncharacterized protein {ECO:0000313|EMBL:CCB47300.1}
TAIR10AT5G44280.13E-65RING 1A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1091286210917482-
GWHAAZE00000008mRNA1091286210917482-
GWHAAZE00000008exon1091286210912918-
GWHAAZE00000008exon1091392810914158-
GWHAAZE00000008exon1091535610915886-
GWHAAZE00000008exon1091622510916266-
GWHAAZE00000008exon1091637710916497-
GWHAAZE00000008exon1091666410916745-
GWHAAZE00000008exon1091728010917338-
GWHAAZE00000008exon1091747510917482-
GWHAAZE00000008CDS1091747510917482-
GWHAAZE00000008CDS1091728010917338-
GWHAAZE00000008CDS1091666410916745-
GWHAAZE00000008CDS1091637710916497-
GWHAAZE00000008CDS1091622510916266-
GWHAAZE00000008CDS1091535610915886-
GWHAAZE00000008CDS1091392810914158-
GWHAAZE00000008CDS1091286210912918-
Transcript Sequence

Network for GWHGAAZE026846

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13923.7zf-C3HC4_217573.40E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.577
SRR3591706second leaf0.168
SRR3591707mature leaf0.084
SRR3591708Shoot apex3.210
SRR3591709Stem2.121
SRR3591710White floral bud1.156
SRR3591711White flower1.171
SRR3591712Green floral bud3.207
SRR3591713Yellow flower0.096
SRP173429 SRR8316895Juvenile bud stage 3.671
SRR8316896Juvenile bud stage 6.575
SRR8316897Juvenile bud stage 2.634
SRR8316894Third green stage 1.793
SRR8316900Third green stage 4.705
SRR8316901Third green stage 4.196
SRR8316898Complete white stage 1.058
SRR8316899Complete white stage 4.438
SRR8316903Complete white stage 1.838
SRR8316902Silver flowering stage0.949
SRR8316904Silver flowering stage0.921
SRR8316905Silver flowering stage0.368
SRR8316906Gold flowering stage 0.590
SRR8316907Gold flowering stage 1.122
SRR8316908Gold flowering stage 0.246
SRP132670SRR6706286Control3.277
SRR6706287Light intensity 50%3.675
SRR6706288Light intensity 20%3.471
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.236
CNS0095593Slightly white alabastrum(diploid) 25.383
CNS0095594Slightly white alabastrum(diploid) 35.090
CNS0095595Whole white alabastrum(diploid) 23.575
CNS0095596Whole white alabastrum(diploid) 33.898
CNS0095597Whole white alabastrum(diploid) 41.944
CNS0095598Silvery flower (diploied) 11.801
CNS0095599Silvery flower (diploied) 22.483
CNS0095600Silvery flower (diploied) 31.690
CNS0095601Golden flower (diploid) 11.875
CNS0095602Golden flower (diploid) 22.048
CNS0095603Golden flower (diploid) 31.650
CNS0095604Slightly white alabastrum(tetraploid) 13.786
CNS0095605Slightly white alabastrum(tetraploid) 23.775
CNS0095606Slightly white alabastrum(tetraploid) 33.141
CNS0095607Whole white alabastrum(tetraploid) 13.467
CNS0095608Whole white alabastrum(tetraploid) 22.059
CNS0095609Whole white alabastrum(tetraploid) 32.623
CNS0095610Silvery flower (tetraploid) 11.076
CNS0095611Silvery flower (tetraploid) 20.884
CNS0095612Silvery flower (tetraploid) 30.284
CNS0095613Golden flower (tetraploid) 10.252
CNS0095614Golden flower (tetraploid) 20.610
CNS0095615Golden flower (tetraploid) 30.162
CRA001975CRR073297Stem 18.275
CRR073298Stem 27.681
CRR073299Stem 36.216
CRR073300Leaf 14.903
CRR073301Leaf 26.405
CRR073302Leaf 33.394
CRR073303Juvenile bud 14.359
CRR073304Juvenile bud 21.230
CRR073305Juvenile bud 34.892
CRR073306Third green 10.849
CRR073307Third green 21.607
CRR073308Third green 30.946
CRR073309Second white 10.300
CRR073310Second white 20.759
CRR073311Second white 30.912
CRR073312Silver flowering 10.632
CRR073313Silver flowering 20.611
CRR073314Silver flowering 30.746
CRR073315Gold flowering 10.471
CRR073316Gold flowering 20.916
CRR073317Gold flowering 30.074
CRR073318Tawny withering 13.678
CRR073319Tawny withering 21.559
CRR073320Tawny withering 33.708