Gene detail

Detail information of GWHGAAZE026852

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656983.1	0	PREDICTED: switch 2 [Vitis vinifera]
COG	YP_008150051.1	1E-59	hypothetical protein SCE1572_18175
Swissprot	tr\|F4I2H2\|CHR9_ARATH	0	Switch 2 {ECO:0000312\|EMBL:AEE27606.1}
trEMBL	tr\|E0CTF5\|E0CTF5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21870.3}
TAIR10	AT1G03750.1	0	switch 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10977017	10983403	-
GWHAAZE00000008	mRNA	10977017	10983403	-
GWHAAZE00000008	exon	10983011	10983403	-
GWHAAZE00000008	exon	10981835	10981941	-
GWHAAZE00000008	exon	10980644	10981571	-
GWHAAZE00000008	exon	10979659	10979906	-
GWHAAZE00000008	exon	10979303	10979429	-
GWHAAZE00000008	exon	10978700	10978975	-
GWHAAZE00000008	exon	10977966	10978239	-
GWHAAZE00000008	exon	10977017	10977537	-
GWHAAZE00000008	CDS	10983011	10983403	-
GWHAAZE00000008	CDS	10981835	10981941	-
GWHAAZE00000008	CDS	10980644	10981571	-
GWHAAZE00000008	CDS	10979659	10979906	-
GWHAAZE00000008	CDS	10979303	10979429	-
GWHAAZE00000008	CDS	10978700	10978975	-
GWHAAZE00000008	CDS	10977966	10978239	-
GWHAAZE00000008	CDS	10977221	10977537	-
GWHAAZE00000008	three_prime_UTR	10977017	10977220	-

Transcript Sequence
>GWHTAAZE026886 ATGTCGTTAAGCATCTTCAAAGAAACCCTCAAACCCTGCTCCAATTCATCATCTTCATCTCAATCCTCCACTCCAATCTCTTCCAATTCATCAACTTCCCATCAATTTGATTTTGATCCACCATTAAACCCTAGAATTCCCCCAAAATCTTCAATCTCTCAGCAACTTCTACGCCTCCAAGATTCTGAATCTTTGCCCCGAACTCAATCACATGGTCAACTCAAACAAACCCCAGTAGTTGGTTTTGAAGGCGAACACGAGGATGAAGAAGAATATGAAGAAAAACAGTATGGGTTTGGGAGGCCAAAATTGGATGGTTTTCAGTTTGATCACACTGGACCTTATGAACCACTAGTACTACTGTCTTCACCTGATGGGACTCCGTTAGTACAGGTCCCTGCCTCCATAAATATTAGGCTTCTGCAACATCAAAGAGAAGGAGTGAAGTTTTTGTATAAATTGTACAAGAACAACCATGGAGGTGTTCTTGGAGATGACATGGGATTAGGGAAGACTATTCAGACGATAGCCTTCCTTTCAGCTGTATATGGCAAGGATGGAGAATTTGGTGAAACAACATCTCTAAAGGGAACTCTGGTAGCGAAGAATAGCCCTGTACTAATAATTTGCCCTAGTTCCGTTATTCACAACTGGGAGAATGAGTTCTCTAAGTGGTCAACATTCAATGTTTCTATTTACCATGGCTCAAACCGTGACTTCATCATTGAGAAATTACATGCACGAGAAGTTGAGGTACTTATAACCAGTTTCGACACATATAGAATTCAAAACAGCACTTTGTCAGTCTTTCAGTGGGAGATTGTGGTCGTTGATGAGGCACACCGGCTCAAGAACGAAAAATCAAAACTCTATGGTGCTTGCCTGGAAATCAAAACCCGAAAACGGTATGGTCTCACAGGGACCATAATGCAGAACAAGATTATGGAGCTATTCAATCTCTTTGACTGGGTGGCACCTGAGTGCTTGGGGAACCGTGAACATTTTCGGGAATTTTATGATGAACCCCTCAAGCATGGTCAAAGGTCGACGGCTCCAGAACGGTTTGTGCGGGTTGCTGATGAACGAAAACAGCACTTGGTGGCAGTTCTACAGAAGTATCTTTTAAGGAGGACAAAGGAGGAGACTATAGGGCATCTTATGATGGGGAAGGAAGATAATGTCGTTTTTTGTGCCATGAGCGAATTGCAAAAACGGGTTTATCAGAGGATTTTACAGATACCAGATATTCAGTGCCTTATAAACAAGGACCTTCCTTGTAGTTGTGGGAGCCCTCTTAAGCAAGTTGAATGTTGCAAAAGAATTGTCCCAAATGGATTGATTTGGCCTTACCTTCATAGGGAGAATCCAGATGGTTGTGATTGGTGCCCTTATTGCCTTGTTTTCCCTTGCCTTCTCAAGCTCCAGCAGATAAGCAATCACCTGGAGCTCATAAAACCGAATCCAAGGGACGACTCAGATAAACAGAATAAAGATGCAGCATTTGCCTCTGCTGTCTTTGGTAATGATATCGATTTGGTGGGGGGGAACACTCAGAATCAGAGTTTTATGGGACTGAGCGATGTTGAACATTGTGGCAAAATGAGGGCTTTGGAAAAATTGATGTTATCTTGGATTTCACGAGGTGATAAGATTCTTCTCTTCAGTTACTCTGTCAGGATGCTGGACATACTAGAAAAGTTTCTTATACGAAAAGGTTATTGCTTCTCAAGACTAGACGGGTCCACGCCAACTAGCTTACGACAGCCCCTTGTTGATGACTTCAATTCGAGTCCAAGCAAACAGGTGTTCCTTATATCAACTAGAGCAGGTGGGCTTGGACTGAACCTTGTGAGTGCAAATCGCGTAGTAATATTTGATCCAAACTGGAACCCGGCCCAGGACTTGCAGGCCCAGGACAGGTCATTCCGTTTTGGGCAGAAGCGGCATGTCGTAGTTTTCCGCCTTCTAGCTGCCGGTTCTCTCGAGGAGCTCGTTTACTCCCGCCAGGTGTATAAACAGCAGCTATCCAATATTGCTGTTTCTGGGAAAATGGAAAAAAGATATTTTGAAGGTGTCCAGGATTGCAAGGAGTTTCCAGGCGAGCTTTTTGGGATCTGTAATCTGTTTCGTGATCTATCCGACAAGCTTTTTACTAGTGAGATCATTGAATTACACGAAAAACGAGGTCAGGAATATGAACAACATCGGAGTGCAAAACAGGATTTGAATAAGCTTGGGATGTACCTTGTTCCTTCAGAAGCGGTGAAAGAAGAGGTTTCATCAGCCTCTGAAACCAGCAAGTTAAACGATTTGGAGAGGAATACAAGAATTAAACCTGTACTTGAAGACTTGGGCATTGTATATGCTCACCGTAATGAAGATATTGTCAACTACGGGCCTGCGACTCAAGAGAAGAAAGAACCGAGTGAGCCCCAGAATGATGGTCCCCCCACTACGGAGAGAAGGAAATCGGACGTTGTGTGTGGGAAAGAGAACGAGTCATCCTTGAAGATGAGAAAGAGGAGCCAATATAGCGTAATTGCAGAGTTCATGGGCATGGAAGAAGTTGAGTTTAGCAAGTGGTTACTTTCAGCATCTCCTGCAGAGAGGGAAAAGGTGCTTAGGGAATACAGGAGGAGTAAAAAGGATAAGCAGCCTCCTTATAGTTGAAAAGTTTGCTCACCCTCACATGTTGTATAATATTGTGTATTAATTAATAGATTTTTGAAGTTACAGAGATGTTGGTAAAATCTTTTTAGGTTTTTCTAGGGATCCCTTTTTTTCTCCTTTGTAATGATGTGATTGTAATAGATATGGGGGAATTTGATCATCAATTGGTTATTCAATTGATCAATTCATTGTTAGCTGGATTAT

Network for GWHGAAZE026852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	152	413	3.00E-54
PF00271.32	Helicase_C	533	645	2.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.782
	SRR3591706	second leaf	7.931
	SRR3591707	mature leaf	10.853
	SRR3591708	Shoot apex	8.889
	SRR3591709	Stem	10.465
	SRR3591710	White floral bud	10.427
	SRR3591711	White flower	11.587
	SRR3591712	Green floral bud	8.294
	SRR3591713	Yellow flower	11.149
SRP173429	SRR8316895	Juvenile bud stage	6.387
	SRR8316896	Juvenile bud stage	8.307
	SRR8316897	Juvenile bud stage	2.976
	SRR8316894	Third green stage	3.138
	SRR8316900	Third green stage	7.278
	SRR8316901	Third green stage	7.311
	SRR8316898	Complete white stage	3.813
	SRR8316899	Complete white stage	9.432
	SRR8316903	Complete white stage	6.453
	SRR8316902	Silver flowering stage	3.944
	SRR8316904	Silver flowering stage	5.005
	SRR8316905	Silver flowering stage	2.948
	SRR8316906	Gold flowering stage	9.652
	SRR8316907	Gold flowering stage	7.692
	SRR8316908	Gold flowering stage	10.138
SRP132670	SRR6706286	Control	5.072
	SRR6706287	Light intensity 50%	5.141
	SRR6706288	Light intensity 20%	5.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.003
	CNS0095593	Slightly white alabastrum(diploid) 2	5.946
	CNS0095594	Slightly white alabastrum(diploid) 3	6.075
	CNS0095595	Whole white alabastrum(diploid) 2	5.739
	CNS0095596	Whole white alabastrum(diploid) 3	4.530
	CNS0095597	Whole white alabastrum(diploid) 4	5.018
	CNS0095598	Silvery flower (diploied) 1	9.846
	CNS0095599	Silvery flower (diploied) 2	7.295
	CNS0095600	Silvery flower (diploied) 3	10.099
	CNS0095601	Golden flower (diploid) 1	8.424
	CNS0095602	Golden flower (diploid) 2	11.165
	CNS0095603	Golden flower (diploid) 3	10.420
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.622
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.628
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.957
	CNS0095610	Silvery flower (tetraploid) 1	9.202
	CNS0095611	Silvery flower (tetraploid) 2	7.811
	CNS0095612	Silvery flower (tetraploid) 3	6.262
	CNS0095613	Golden flower (tetraploid) 1	6.922
	CNS0095614	Golden flower (tetraploid) 2	8.092
	CNS0095615	Golden flower (tetraploid) 3	8.303
CRA001975	CRR073297	Stem 1	7.865
	CRR073298	Stem 2	5.943
	CRR073299	Stem 3	4.499
	CRR073300	Leaf 1	6.837
	CRR073301	Leaf 2	5.934
	CRR073302	Leaf 3	3.733
	CRR073303	Juvenile bud 1	3.601
	CRR073304	Juvenile bud 2	2.500
	CRR073305	Juvenile bud 3	5.176
	CRR073306	Third green 1	1.570
	CRR073307	Third green 2	1.744
	CRR073308	Third green 3	2.306
	CRR073309	Second white 1	1.756
	CRR073310	Second white 2	3.501
	CRR073311	Second white 3	2.800
	CRR073312	Silver flowering 1	3.219
	CRR073313	Silver flowering 2	2.753
	CRR073314	Silver flowering 3	2.595
	CRR073315	Gold flowering 1	2.527
	CRR073316	Gold flowering 2	3.218
	CRR073317	Gold flowering 3	1.813
	CRR073318	Tawny withering 1	3.053
	CRR073319	Tawny withering 2	6.357
	CRR073320	Tawny withering 3	3.970