Gene detail

Detail information of GWHGAAZE026855

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI21868.3	0	unnamed protein product [Vitis vinifera]
COG	YP_003268638.1	5E-72	methylthioribulose-1-phosphate dehydratase
Swissprot	tr\|E0CTF3\|MTBC2_VITVI	0	Enolase-phosphatase E1 {ECO:0000255\|HAMAP-Rule:MF_03118}
trEMBL	tr\|A0A061E327\|A0A061E327_THECC	0	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 {ECO:0000256\|HAMAP-Rule:MF_03118}
TAIR10	AT5G53850.2	1E-175	haloacid dehalogenase-like hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11025023	11028652	+
GWHAAZE00000008	mRNA	11025023	11028652	+
GWHAAZE00000008	exon	11025023	11025278	+
GWHAAZE00000008	exon	11025368	11025504	+
GWHAAZE00000008	exon	11025926	11026021	+
GWHAAZE00000008	exon	11026536	11026655	+
GWHAAZE00000008	exon	11026853	11026942	+
GWHAAZE00000008	exon	11027110	11027289	+
GWHAAZE00000008	exon	11027422	11027577	+
GWHAAZE00000008	exon	11027680	11027829	+
GWHAAZE00000008	exon	11027907	11028008	+
GWHAAZE00000008	exon	11028161	11028270	+
GWHAAZE00000008	exon	11028362	11028480	+
GWHAAZE00000008	exon	11028627	11028652	+
GWHAAZE00000008	CDS	11025023	11025278	+
GWHAAZE00000008	CDS	11025368	11025504	+
GWHAAZE00000008	CDS	11025926	11026021	+
GWHAAZE00000008	CDS	11026536	11026655	+
GWHAAZE00000008	CDS	11026853	11026942	+
GWHAAZE00000008	CDS	11027110	11027289	+
GWHAAZE00000008	CDS	11027422	11027577	+
GWHAAZE00000008	CDS	11027680	11027829	+
GWHAAZE00000008	CDS	11027907	11028008	+
GWHAAZE00000008	CDS	11028161	11028270	+
GWHAAZE00000008	CDS	11028362	11028480	+
GWHAAZE00000008	CDS	11028627	11028652	+

Transcript Sequence
>GWHTAAZE026889 ATGGAGTCACTATCAACGTCCTCAGTAGGGATGGCAACATCTGCGCCAGAGGTGCCGAACGGGTTGGCCATGGAAGAGTCATCCAAGGGGTATGTAGAGACTATTGCAGTGAACAAAACAAAGGTGCTGGTGTCCGAGCTCTGTCGTCATTTCTACACACTTGGATGGGTATCAGGTACTGGGGGGAGCATCACCATTAGAGCCCACGATGATTTTATTCCGAAGCCCCGTCAACTTATTGTCATGTCTGCTTCAGGTGTTCAGAAGGAGAGGATGGTCCCGGAGGACATGTATGTGCTCTCTTCTGATGGGTATAGTTTGTTGGCACCTCCTCCCAAGCCTTATCCCCACAACCCTCCCAAATGTACTGATTGTGCCCCTCTTTTCTTGAAGATCTATGAGATACGTAATGCTGGGGCTGCGATTCACAGTCACGGGATGGAGGCTTGTCTTGTAACAATGATTCATCCTTTTTCAAAGGATTTTCGAATTACTCATATGGAGATGATAAAAGGTATCCAAGGACATGGTTATCATGATGAGCTTGTTGTCCCAATAATTGAGAATGATGCCCATGAAAGAGAGCTCACAGAATCTCTTGCCGAGGCGATTACTGCTTATCCAAAGACAACAGCAGTGCTTGTTCGTAACCACGGGGTATATATATGGGGAGATTCATGGATCAGCGCCAAGACACAAGCAGAATGCTATCACTATCTATTTGATGCCGCTGTCAAGCTCCATCAATTGGGACTGGATTGTTCTACGCCTGGTCAAGATCCCATTAGCAACAATGGAATTTGCAGATGTGGTGGGAATACGAGCAGGGCTTTGAAGATGGGGAATCTTGGTTTAGATTATGTGATTGAGCCTTCACAACGCTGTATTCTTCTTGATGTTGAAGGGACAACAACTGCTAAATCATTTGTAACAGATATTCTTGTTCCTTATGCCAATGATAATTTGGTAAAGCATTTATCTGAATCCTATGACTGTGAGGAGACTCAAGTTGATATTGCTCTCTTGAGTTCTCAAATCCAGTGTGATTTGGAGCAAGGTGTAGTTGGTGCTGTTCCTGTGACTCCTAATCACATGGGAAAAGATATGGTGATTGCTTCTTTGGCTGCTAATGTGGAAGCTATGATTAGGACCAACAGAAAAGTTCCCTCTTTAAAGCAACTGCAAGGCCACATATGGAGAAAAGGGTTTCAAAGTAATGAGTTGGTGGGTGTAGTGTTTGATGATGTACCAGAAGCTCTCGAAAGGTGGCATTCTTCTGGTATCAAGGTGTACGTCTATTCTAGTAGCAGCAGAGAAGCACAGCAGATCCTCTTTGGAAATTCAAATTACGGCAACTTGAGAAAGTACTTGTGCGGATTTTTTGATACAGCTGTTGGAAGCAAAAGCGAAGCACAAAGTTACGTTGAAATTTGCCAAACAGTGGGAGTTGATAGGCCACTGGACATGTTATTTATAACAGATGCTTTTCAAGAAGCTGTGGCTGCTAGGGCTGCAGCTTTAAGGAATCAGATTCCGGATTGA

Network for GWHGAAZE026855

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00596.22	Aldolase_II	45	244	2.30E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16054	DEP1	Metabolic pathways	map01100
K16054	DEP1	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0019509	biological_process	L-methionine salvage from methylthioadenosine
GO:0005737	cellular_component	cytoplasm
GO:0000287	molecular_function	magnesium ion binding
GO:0043874	molecular_function	acireductone synthase activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.937
	SRR3591706	second leaf	0.060
	SRR3591707	mature leaf	0.654
	SRR3591708	Shoot apex	0.066
	SRR3591709	Stem	1.217
	SRR3591710	White floral bud	0.137
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.257
	SRR3591713	Yellow flower	0.048
SRP173429	SRR8316895	Juvenile bud stage	0.025
	SRR8316896	Juvenile bud stage	0.156
	SRR8316897	Juvenile bud stage	0.132
	SRR8316894	Third green stage	0.156
	SRR8316900	Third green stage	0.238
	SRR8316901	Third green stage	0.142
	SRR8316898	Complete white stage	0.061
	SRR8316899	Complete white stage	0.331
	SRR8316903	Complete white stage	0.297
	SRR8316902	Silver flowering stage	1.237
	SRR8316904	Silver flowering stage	0.849
	SRR8316905	Silver flowering stage	0.462
	SRR8316906	Gold flowering stage	0.694
	SRR8316907	Gold flowering stage	0.858
	SRR8316908	Gold flowering stage	0.280
SRP132670	SRR6706286	Control	0.208
	SRR6706287	Light intensity 50%	0.108
	SRR6706288	Light intensity 20%	0.115
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.486
	CNS0095593	Slightly white alabastrum(diploid) 2	0.875
	CNS0095594	Slightly white alabastrum(diploid) 3	0.481
	CNS0095595	Whole white alabastrum(diploid) 2	0.417
	CNS0095596	Whole white alabastrum(diploid) 3	0.222
	CNS0095597	Whole white alabastrum(diploid) 4	0.388
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.082
	CNS0095600	Silvery flower (diploied) 3	0.080
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.097
	CNS0095603	Golden flower (diploid) 3	0.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.470
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.196
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.019
	CNS0095610	Silvery flower (tetraploid) 1	0.109
	CNS0095611	Silvery flower (tetraploid) 2	0.062
	CNS0095612	Silvery flower (tetraploid) 3	0.075
	CNS0095613	Golden flower (tetraploid) 1	0.096
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.295
	CRR073298	Stem 2	0.205
	CRR073299	Stem 3	0.021
	CRR073300	Leaf 1	0.175
	CRR073301	Leaf 2	0.196
	CRR073302	Leaf 3	0.098
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.097
	CRR073305	Juvenile bud 3	0.043
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.137
	CRR073311	Second white 3	0.249
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.358
	CRR073316	Gold flowering 2	0.135
	CRR073317	Gold flowering 3	0.358
	CRR073318	Tawny withering 1	0.265
	CRR073319	Tawny withering 2	0.529
	CRR073320	Tawny withering 3	0.221