Gene detail

Detail information of GWHGAAZE026886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002517964.1	0	Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis]
COG	YP_003444757.1	5E-19	alpha-L-glutamate ligase
Swissprot	tr\|Q6I581\|GH35_ORYSJ	0	Probable indole-3-acetic acid-amido synthetase GH3.5
trEMBL	tr\|B9RW45\|B9RW45_RICCO	0	Indole-3-acetic acid-amido synthetase GH3.5, putative {ECO:0000313\|EMBL:EEF44482.1}
TAIR10	AT4G03400.1	0	Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11549204	11552576	+
GWHAAZE00000008	mRNA	11549204	11552576	+
GWHAAZE00000008	exon	11549204	11549514	+
GWHAAZE00000008	exon	11549733	11549834	+
GWHAAZE00000008	exon	11550122	11550954	+
GWHAAZE00000008	exon	11552038	11552576	+
GWHAAZE00000008	CDS	11549204	11549514	+
GWHAAZE00000008	CDS	11549733	11549834	+
GWHAAZE00000008	CDS	11550122	11550954	+
GWHAAZE00000008	CDS	11552038	11552576	+

Transcript Sequence
>GWHTAAZE026920 ATGGAGCCACCTCCTGCTCTGAGTAATTGGGACATGATCAAATGGTTCGAGGATTTAGCCGAAAATGCTGGCCCGGTTCAAACCCAGACTCTTAGAAGGATTCTTGAACTCAATTGTGGAGCTGAGTACCTTAAAAAATGGCTCGGAGATATCCATTTTGAAGATGTAGATGATGATTCAATAGAGTCCCTTTTCACTTCCTTGGTCCCTCTTGCTTCTCATTCTGATTTGGAGCCTTATATTCAAAGAATTGCAGATGGGGATACTTCACCTTTACTCACTCAACACCCCATTACTACTCTCTCCTTAAGTTCTGGAACTACAGAGGGAAGACAAAAGTACGTACCCTTTACTTGCCATAGCTCCAAGACTACTCTTCAGATTTTCAGCATAGCAGCAGCTTATAGATCAAGGGACTATCCGATAAGGGAAGGAGGAAGGATACTTGAGTTCATATACGGCAGCAAAAGAATCAAAACAAAGGGAGGCCTAACAGTGGGAACAGCAACAACCCATTATTTTGCAAGTGAAGAATTCAAGATCAAACAAGAAAACACCAAATCATTCACTTGCAGCCCAGAGGAAGTAATTTTGAGTGGAGACTACAAATGCTCAACATATTGTCACCTCCTTCTCGGCCTCTTCTTTTCAAATCAAGTAGAGTTCATAACATCAACTTTTGCATATGGCATAGTCCAAGCTTTTAGATCATTCGAAGAACTCTATAAAGACCTATGTAACGACATAAAAAACGGCACGCTTAGTACCTCGATAATTGTGTCGCCGAAGGTCCGTTTTTCGGTTCTTGAAATCCTCTCGCCAAACCCATGCTTGGCCTCTAAAATTGAAGCCATTTGTGAGGAATTGAAGGAGAAAGAGTGGTTTGGGGTAATCCCAAAGCTGTGGCCAAATGCCAAGTATGTTTACTCCATAATGACAGGCTCAATGCAGCATTACTTGAAGAAACTAAGGCATTATGCAGGGGAGTTGGCATTGGTGAGTGCTGATTATGGGTCCACAGAGAGTTGGATTGGGGTAAATGTGGACCCTACTTCTCCACCAGAGGATGTTACTTTTACAGTCATACCCAATTTCTCTTACTTCGAGTTCATACCACTTTATAGGCATAATCAAGATTTCACTTCTGCTGCTGCTGCTGATGATGACTTCATGGAAGGTGAACCCTTGCCCCTCTCTAAAGTCGAAGTTGGGCAGCAGTATGAGATTGTCCTCACCACTTTCACTGGTCTTTACAGGTACAGATTAGGAGATGTGGTTGAAGTTGCTAGTTTTCACAAAGGCACCCCCAAACTAAACTTCATATGCAGAAGAAAGCTAATTCTAACGGTAAACATTGACAAAAACACAGAGAAAGACCTACAGCTAGTAGTAGAAAAGGGGTCCCAAATACTAATGAGCCAAGCCCGAGCCGAGCTCGTTGACTTCACTAGCCACGCTCACGTTGAGGCTCAACCAGGGCACTATATAATCTACTGGGAAATCAAAGGAGAAGTAGAAGAGCATGTATTCCAAGAATGCTGTGGAGAAATGGATGCATCGTTTGTGGACCACGGTTACATAGTCTCGAGGAGGACAAATTCGATTGGACCCTTAGAGCTTTGCATTGTGGAGAGGGGCACTTTTAAGAAGATTTTGGATTATTTTTTGGGGAATGGGGCAGCATTGAGCCAGTTCAAGACTCCAAGGTGCACTAATAACCACTTTTTGCTGAAAATCCTCAATGTTTGTACTATGAAAAGGTTCCATAGCACAGCATATGGGTGA

Network for GWHGAAZE026886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03321.14	GH3	15	573	2.50E-180

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14487	GH3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.248
	SRR3591706	second leaf	37.015
	SRR3591707	mature leaf	82.196
	SRR3591708	Shoot apex	21.556
	SRR3591709	Stem	5.187
	SRR3591710	White floral bud	18.731
	SRR3591711	White flower	10.669
	SRR3591712	Green floral bud	3.279
	SRR3591713	Yellow flower	2.377
SRP173429	SRR8316895	Juvenile bud stage	9.659
	SRR8316896	Juvenile bud stage	7.512
	SRR8316897	Juvenile bud stage	3.392
	SRR8316894	Third green stage	2.932
	SRR8316900	Third green stage	4.374
	SRR8316901	Third green stage	4.591
	SRR8316898	Complete white stage	2.747
	SRR8316899	Complete white stage	8.779
	SRR8316903	Complete white stage	4.713
	SRR8316902	Silver flowering stage	5.414
	SRR8316904	Silver flowering stage	5.739
	SRR8316905	Silver flowering stage	3.041
	SRR8316906	Gold flowering stage	5.322
	SRR8316907	Gold flowering stage	4.255
	SRR8316908	Gold flowering stage	5.418
SRP132670	SRR6706286	Control	11.114
	SRR6706287	Light intensity 50%	12.527
	SRR6706288	Light intensity 20%	12.509
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.573
	CNS0095593	Slightly white alabastrum(diploid) 2	7.747
	CNS0095594	Slightly white alabastrum(diploid) 3	10.906
	CNS0095595	Whole white alabastrum(diploid) 2	6.038
	CNS0095596	Whole white alabastrum(diploid) 3	4.304
	CNS0095597	Whole white alabastrum(diploid) 4	5.747
	CNS0095598	Silvery flower (diploied) 1	18.179
	CNS0095599	Silvery flower (diploied) 2	11.998
	CNS0095600	Silvery flower (diploied) 3	11.406
	CNS0095601	Golden flower (diploid) 1	9.474
	CNS0095602	Golden flower (diploid) 2	10.556
	CNS0095603	Golden flower (diploid) 3	9.459
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.429
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.768
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.623
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.301
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.706
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.286
	CNS0095610	Silvery flower (tetraploid) 1	14.107
	CNS0095611	Silvery flower (tetraploid) 2	15.298
	CNS0095612	Silvery flower (tetraploid) 3	1.687
	CNS0095613	Golden flower (tetraploid) 1	2.100
	CNS0095614	Golden flower (tetraploid) 2	9.109
	CNS0095615	Golden flower (tetraploid) 3	1.847
CRA001975	CRR073297	Stem 1	3.862
	CRR073298	Stem 2	4.008
	CRR073299	Stem 3	4.511
	CRR073300	Leaf 1	2.626
	CRR073301	Leaf 2	4.671
	CRR073302	Leaf 3	2.250
	CRR073303	Juvenile bud 1	2.478
	CRR073304	Juvenile bud 2	1.241
	CRR073305	Juvenile bud 3	4.116
	CRR073306	Third green 1	12.657
	CRR073307	Third green 2	7.676
	CRR073308	Third green 3	9.182
	CRR073309	Second white 1	4.908
	CRR073310	Second white 2	5.114
	CRR073311	Second white 3	4.666
	CRR073312	Silver flowering 1	2.105
	CRR073313	Silver flowering 2	0.731
	CRR073314	Silver flowering 3	0.813
	CRR073315	Gold flowering 1	8.772
	CRR073316	Gold flowering 2	8.688
	CRR073317	Gold flowering 3	4.258
	CRR073318	Tawny withering 1	0.813
	CRR073319	Tawny withering 2	1.532
	CRR073320	Tawny withering 3	0.381