Detail information of GWHGAAZE026896


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14712.13.02138E-88unnamed protein product [Coffea canephora]
Swissprottr|O64791|SY124_ARATH4E-80Syntaxin-124
trEMBLtr|A0A068V2F3|A0A068V2F3_COFCA1E-88Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313|EMBL:CDP14712.1}
TAIR10AT1G61290.12E-60syntaxin of plants 124

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1164473911645242-
GWHAAZE00000008mRNA1164473911645242-
GWHAAZE00000008exon1164507111645242-
GWHAAZE00000008exon1164473911645040-
GWHAAZE00000008CDS1164507111645242-
GWHAAZE00000008CDS1164473911645040-
Transcript Sequence

Network for GWHGAAZE026896

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00804.26Syntaxin1914.40E-33
PF05739.20SNARE931441.20E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08486STX1B_2_3 SNARE interactions in vesicular transport map04130
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0016192biological_processvesicle-mediated transport
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0005484molecular_functionSNAP receptor activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE026896.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200220240Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.197
SRR3591709Stem1.337
SRR3591710White floral bud211.131
SRR3591711White flower7.741
SRR3591712Green floral bud49.800
SRR3591713Yellow flower6.471
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 5.708
SRR8316901Third green stage 1.537
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.375
SRR8316903Complete white stage 0.207
SRR8316902Silver flowering stage1.678
SRR8316904Silver flowering stage1.394
SRR8316905Silver flowering stage1.069
SRR8316906Gold flowering stage 0.041
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control13.768
SRR6706287Light intensity 50%18.796
SRR6706288Light intensity 20%12.074
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.462
CNS0095593Slightly white alabastrum(diploid) 20.033
CNS0095594Slightly white alabastrum(diploid) 30.740
CNS0095595Whole white alabastrum(diploid) 215.263
CNS0095596Whole white alabastrum(diploid) 316.081
CNS0095597Whole white alabastrum(diploid) 458.715
CNS0095598Silvery flower (diploied) 16.580
CNS0095599Silvery flower (diploied) 231.351
CNS0095600Silvery flower (diploied) 33.134
CNS0095601Golden flower (diploid) 17.441
CNS0095602Golden flower (diploid) 23.122
CNS0095603Golden flower (diploid) 34.150
CNS0095604Slightly white alabastrum(tetraploid) 10.198
CNS0095605Slightly white alabastrum(tetraploid) 20.107
CNS0095606Slightly white alabastrum(tetraploid) 30.391
CNS0095607Whole white alabastrum(tetraploid) 136.418
CNS0095608Whole white alabastrum(tetraploid) 298.456
CNS0095609Whole white alabastrum(tetraploid) 319.175
CNS0095610Silvery flower (tetraploid) 13.575
CNS0095611Silvery flower (tetraploid) 29.364
CNS0095612Silvery flower (tetraploid) 326.201
CNS0095613Golden flower (tetraploid) 17.565
CNS0095614Golden flower (tetraploid) 20.953
CNS0095615Golden flower (tetraploid) 311.262
CRA001975CRR073297Stem 11.279
CRR073298Stem 21.557
CRR073299Stem 30.575
CRR073300Leaf 114.205
CRR073301Leaf 22.404
CRR073302Leaf 30.438
CRR073303Juvenile bud 137.028
CRR073304Juvenile bud 239.804
CRR073305Juvenile bud 32.764
CRR073306Third green 118.369
CRR073307Third green 218.743
CRR073308Third green 318.601
CRR073309Second white 10.416
CRR073310Second white 23.162
CRR073311Second white 32.376
CRR073312Silver flowering 114.023
CRR073313Silver flowering 29.839
CRR073314Silver flowering 38.244
CRR073315Gold flowering 19.244
CRR073316Gold flowering 23.242
CRR073317Gold flowering 32.648
CRR073318Tawny withering 116.061
CRR073319Tawny withering 219.178
CRR073320Tawny withering 313.979