Gene detail

Detail information of GWHGAAZE026900

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081011.1	3.21998E-67	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	3E-28	F-box protein At3g07870
trEMBL	tr\|V4SXC9\|V4SXC9_9ROSI	7E-67	Uncharacterized protein {ECO:0000313\|EMBL:ESR41826.1}
TAIR10	AT3G07870.1	6E-26	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11687510	11692094	-
GWHAAZE00000008	mRNA	11687510	11692094	-
GWHAAZE00000008	exon	11687510	11687639	-
GWHAAZE00000008	exon	11690879	11691344	-
GWHAAZE00000008	exon	11691449	11692094	-
GWHAAZE00000008	CDS	11691449	11692094	-
GWHAAZE00000008	CDS	11690879	11691344	-
GWHAAZE00000008	CDS	11687510	11687639	-

Transcript Sequence
>GWHTAAZE026934 ATGGAGAAAGACAAGGGACATCAAACAATGGAGGAGATGATAATAATCAAATCCATAACAGATCTTCCCTATCCCATTATCGCAGACATTCTCTCGAGGCTCCCCACCAAATCCATAATCGCTTGCAGGTACGTATGCAAAAACTGGCTCAATTTAACCTCATTTGACCCCACTTTTGCTCATCTCCACTTCTCTACATCTCCATTGGACCTCCTTTTACGAATCCAAACAACCACCCCAGGACGCTTATCTTCGACTCTCCACTTGCTCGATCCTGAACTTGATTGTCGCAGCTCCGAGAAACAAATTGACATCAAACCCAGATTTAACCTTCGTAAGCTTGAATCCGGCGACGATTTAAGCGTTGCCATTGTGAATTCGTGTAATGGATTGCTATGTTTGAGTGATGCTATAGGTAATAATCCGTCTTTTGTTTGCAACCCAATTACTGGTGAATACATTATAATCCCTAAACCTAATGAAGATGTTAGAATGGAAAGTGTAAAGTATTCCGGGTTGGGCTTTTGTCCTAACACAAAGCAATACAAGGTGTTGCGAATGTTTTATGAATTGGATGGTGATCTTCCAAATCTTACTTTACATAGGATGGCTGAGATACATGCTTTAGGCTCTGATTTGTGGAGAGTGTCCTTTGATTTTGTGAGCGAGCGCTTTGGGAAAATCCCACCGCCTCCTCATTTTGGGGAGAAACACAAGGAGCATAAAGCAGAGATTAGCTTGGGAGTACTAGGAGAACATCTTTATCTGTGTGATGCTACCTCTGCGCTGCAGATTGATGTATGGTTGATGAAAGAATATGGTGTCCAAGAATCTTGGAGCAAGGACTATGTCATTGATAAGTTCTGTATAGATCCCATTATTTTCCATGAGGGCACGTACCGCCCTATAAAACTCCTTAAAAATGGGGAAATGCTAATGGTTTATCCTGATTATTACCTGGTATGTTTTGATCCGCTGAAGAAAAGTTGCAGATATTTCAAATTCCGCGAGGTCCAATCACAATTGGAAGTGATTCTTCATACTCCAAGCTTTGCTTCGCTCAAGGATGTTGTGAGTGGGGGCAATGCAAAGGTGTTGAAGCTCAGGCCAAGGAGTGAAGTAGTAGTAGTAGGGGAAGAGATTGAGACTGAAACTCTTTTTCTGGTTCCAGAAGAAGATCCTCAAACTGAAGAAATGGCATGGATCATCAACTATTGGAAGTCTCACTATCGTAGCAACTAG

Network for GWHGAAZE026900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	18	53	7.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.706
	SRR3591706	second leaf	10.036
	SRR3591707	mature leaf	7.947
	SRR3591708	Shoot apex	19.444
	SRR3591709	Stem	16.353
	SRR3591710	White floral bud	12.256
	SRR3591711	White flower	14.693
	SRR3591712	Green floral bud	14.926
	SRR3591713	Yellow flower	13.037
SRP173429	SRR8316895	Juvenile bud stage	8.612
	SRR8316896	Juvenile bud stage	12.451
	SRR8316897	Juvenile bud stage	5.822
	SRR8316894	Third green stage	5.719
	SRR8316900	Third green stage	13.883
	SRR8316901	Third green stage	13.485
	SRR8316898	Complete white stage	6.575
	SRR8316899	Complete white stage	22.103
	SRR8316903	Complete white stage	8.977
	SRR8316902	Silver flowering stage	5.493
	SRR8316904	Silver flowering stage	7.625
	SRR8316905	Silver flowering stage	3.655
	SRR8316906	Gold flowering stage	11.965
	SRR8316907	Gold flowering stage	9.670
	SRR8316908	Gold flowering stage	14.159
SRP132670	SRR6706286	Control	12.625
	SRR6706287	Light intensity 50%	14.441
	SRR6706288	Light intensity 20%	15.512
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.213
	CNS0095593	Slightly white alabastrum(diploid) 2	12.589
	CNS0095594	Slightly white alabastrum(diploid) 3	8.605
	CNS0095595	Whole white alabastrum(diploid) 2	9.080
	CNS0095596	Whole white alabastrum(diploid) 3	10.138
	CNS0095597	Whole white alabastrum(diploid) 4	6.430
	CNS0095598	Silvery flower (diploied) 1	8.313
	CNS0095599	Silvery flower (diploied) 2	8.503
	CNS0095600	Silvery flower (diploied) 3	10.939
	CNS0095601	Golden flower (diploid) 1	10.759
	CNS0095602	Golden flower (diploid) 2	11.679
	CNS0095603	Golden flower (diploid) 3	13.007
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.312
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.468
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.887
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.024
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.420
	CNS0095610	Silvery flower (tetraploid) 1	8.983
	CNS0095611	Silvery flower (tetraploid) 2	12.884
	CNS0095612	Silvery flower (tetraploid) 3	10.133
	CNS0095613	Golden flower (tetraploid) 1	6.181
	CNS0095614	Golden flower (tetraploid) 2	9.794
	CNS0095615	Golden flower (tetraploid) 3	9.135
CRA001975	CRR073297	Stem 1	16.219
	CRR073298	Stem 2	15.369
	CRR073299	Stem 3	17.553
	CRR073300	Leaf 1	15.610
	CRR073301	Leaf 2	15.258
	CRR073302	Leaf 3	15.986
	CRR073303	Juvenile bud 1	12.499
	CRR073304	Juvenile bud 2	12.826
	CRR073305	Juvenile bud 3	15.815
	CRR073306	Third green 1	5.416
	CRR073307	Third green 2	4.903
	CRR073308	Third green 3	5.820
	CRR073309	Second white 1	6.754
	CRR073310	Second white 2	6.594
	CRR073311	Second white 3	8.285
	CRR073312	Silver flowering 1	5.354
	CRR073313	Silver flowering 2	4.292
	CRR073314	Silver flowering 3	4.645
	CRR073315	Gold flowering 1	5.651
	CRR073316	Gold flowering 2	7.620
	CRR073317	Gold flowering 3	10.905
	CRR073318	Tawny withering 1	14.447
	CRR073319	Tawny withering 2	12.683
	CRR073320	Tawny withering 3	16.350