Detail information of GWHGAAZE026906


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP24193.10hypothetical protein JCGZ_25850 [Jatropha curcas]
trEMBLtr|A0A067JN17|A0A067JN17_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP24193.1}
TAIR10AT1G12470.10zinc ion binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1176894411784578+
GWHAAZE00000008mRNA1176894411784578+
GWHAAZE00000008exon1176894411769106+
GWHAAZE00000008exon1177023611770448+
GWHAAZE00000008exon1177055911770698+
GWHAAZE00000008exon1177126911771364+
GWHAAZE00000008exon1177246811772517+
GWHAAZE00000008exon1177441911774520+
GWHAAZE00000008exon1177473011774874+
GWHAAZE00000008exon1177556511775708+
GWHAAZE00000008exon1177579711775916+
GWHAAZE00000008exon1177633411776390+
GWHAAZE00000008exon1177670011776759+
GWHAAZE00000008exon1177732011777427+
GWHAAZE00000008exon1177807611778218+
GWHAAZE00000008exon1177869811778776+
GWHAAZE00000008exon1177982711779889+
GWHAAZE00000008exon1178007611780206+
GWHAAZE00000008exon1178082711780932+
GWHAAZE00000008exon1178161611781804+
GWHAAZE00000008exon1178193811782165+
GWHAAZE00000008exon1178240811782563+
GWHAAZE00000008exon1178393311784052+
GWHAAZE00000008exon1178440511784578+
GWHAAZE00000008CDS1176894411769106+
GWHAAZE00000008CDS1177023611770448+
GWHAAZE00000008CDS1177055911770698+
GWHAAZE00000008CDS1177126911771364+
GWHAAZE00000008CDS1177246811772517+
GWHAAZE00000008CDS1177441911774520+
GWHAAZE00000008CDS1177473011774874+
GWHAAZE00000008CDS1177556511775708+
GWHAAZE00000008CDS1177579711775916+
GWHAAZE00000008CDS1177633411776390+
GWHAAZE00000008CDS1177670011776759+
GWHAAZE00000008CDS1177732011777427+
GWHAAZE00000008CDS1177807611778218+
GWHAAZE00000008CDS1177869811778776+
GWHAAZE00000008CDS1177982711779889+
GWHAAZE00000008CDS1178007611780206+
GWHAAZE00000008CDS1178082711780932+
GWHAAZE00000008CDS1178161611781804+
GWHAAZE00000008CDS1178193811782165+
GWHAAZE00000008CDS1178240811782563+
GWHAAZE00000008CDS1178393311784052+
GWHAAZE00000008CDS1178440511784578+
Transcript Sequence

Network for GWHGAAZE026906

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05131.15Pep3_Vps182423966.20E-39
PF00637.21Clathrin6017392.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20181VPS18, PEP3 Autophagy - yeast map04138

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.616
SRR3591706second leaf19.308
SRR3591707mature leaf16.292
SRR3591708Shoot apex32.124
SRR3591709Stem36.912
SRR3591710White floral bud15.222
SRR3591711White flower16.619
SRR3591712Green floral bud21.140
SRR3591713Yellow flower14.414
SRP173429 SRR8316895Juvenile bud stage 17.502
SRR8316896Juvenile bud stage 22.826
SRR8316897Juvenile bud stage 9.375
SRR8316894Third green stage 8.822
SRR8316900Third green stage 23.284
SRR8316901Third green stage 19.986
SRR8316898Complete white stage 6.603
SRR8316899Complete white stage 24.311
SRR8316903Complete white stage 14.043
SRR8316902Silver flowering stage5.839
SRR8316904Silver flowering stage8.499
SRR8316905Silver flowering stage3.796
SRR8316906Gold flowering stage 13.682
SRR8316907Gold flowering stage 12.562
SRR8316908Gold flowering stage 14.373
SRP132670SRR6706286Control18.710
SRR6706287Light intensity 50%18.695
SRR6706288Light intensity 20%19.646
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.576
CNS0095593Slightly white alabastrum(diploid) 210.814
CNS0095594Slightly white alabastrum(diploid) 310.968
CNS0095595Whole white alabastrum(diploid) 29.374
CNS0095596Whole white alabastrum(diploid) 37.689
CNS0095597Whole white alabastrum(diploid) 48.747
CNS0095598Silvery flower (diploied) 117.805
CNS0095599Silvery flower (diploied) 216.192
CNS0095600Silvery flower (diploied) 319.252
CNS0095601Golden flower (diploid) 119.622
CNS0095602Golden flower (diploid) 223.601
CNS0095603Golden flower (diploid) 323.091
CNS0095604Slightly white alabastrum(tetraploid) 116.249
CNS0095605Slightly white alabastrum(tetraploid) 212.307
CNS0095606Slightly white alabastrum(tetraploid) 332.620
CNS0095607Whole white alabastrum(tetraploid) 19.651
CNS0095608Whole white alabastrum(tetraploid) 27.047
CNS0095609Whole white alabastrum(tetraploid) 321.395
CNS0095610Silvery flower (tetraploid) 124.479
CNS0095611Silvery flower (tetraploid) 225.454
CNS0095612Silvery flower (tetraploid) 319.507
CNS0095613Golden flower (tetraploid) 111.094
CNS0095614Golden flower (tetraploid) 220.860
CNS0095615Golden flower (tetraploid) 313.751
CRA001975CRR073297Stem 120.922
CRR073298Stem 219.272
CRR073299Stem 314.889
CRR073300Leaf 120.074
CRR073301Leaf 216.691
CRR073302Leaf 316.108
CRR073303Juvenile bud 117.411
CRR073304Juvenile bud 211.180
CRR073305Juvenile bud 323.469
CRR073306Third green 13.396
CRR073307Third green 23.162
CRR073308Third green 34.250
CRR073309Second white 14.258
CRR073310Second white 25.078
CRR073311Second white 34.208
CRR073312Silver flowering 12.960
CRR073313Silver flowering 23.927
CRR073314Silver flowering 33.114
CRR073315Gold flowering 15.238
CRR073316Gold flowering 211.605
CRR073317Gold flowering 34.829
CRR073318Tawny withering 117.407
CRR073319Tawny withering 214.230
CRR073320Tawny withering 320.394