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Detail information of GWHGAAZE026906
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
KDP24193.1
0
hypothetical protein JCGZ_25850 [Jatropha curcas]
trEMBL
tr|A0A067JN17|A0A067JN17_JATCU
0
Uncharacterized protein {ECO:0000313|EMBL:KDP24193.1}
TAIR10
AT1G12470.1
0
zinc ion binding
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000008
gene
11768944
11784578
+
GWHAAZE00000008
mRNA
11768944
11784578
+
GWHAAZE00000008
exon
11768944
11769106
+
GWHAAZE00000008
exon
11770236
11770448
+
GWHAAZE00000008
exon
11770559
11770698
+
GWHAAZE00000008
exon
11771269
11771364
+
GWHAAZE00000008
exon
11772468
11772517
+
GWHAAZE00000008
exon
11774419
11774520
+
GWHAAZE00000008
exon
11774730
11774874
+
GWHAAZE00000008
exon
11775565
11775708
+
GWHAAZE00000008
exon
11775797
11775916
+
GWHAAZE00000008
exon
11776334
11776390
+
GWHAAZE00000008
exon
11776700
11776759
+
GWHAAZE00000008
exon
11777320
11777427
+
GWHAAZE00000008
exon
11778076
11778218
+
GWHAAZE00000008
exon
11778698
11778776
+
GWHAAZE00000008
exon
11779827
11779889
+
GWHAAZE00000008
exon
11780076
11780206
+
GWHAAZE00000008
exon
11780827
11780932
+
GWHAAZE00000008
exon
11781616
11781804
+
GWHAAZE00000008
exon
11781938
11782165
+
GWHAAZE00000008
exon
11782408
11782563
+
GWHAAZE00000008
exon
11783933
11784052
+
GWHAAZE00000008
exon
11784405
11784578
+
GWHAAZE00000008
CDS
11768944
11769106
+
GWHAAZE00000008
CDS
11770236
11770448
+
GWHAAZE00000008
CDS
11770559
11770698
+
GWHAAZE00000008
CDS
11771269
11771364
+
GWHAAZE00000008
CDS
11772468
11772517
+
GWHAAZE00000008
CDS
11774419
11774520
+
GWHAAZE00000008
CDS
11774730
11774874
+
GWHAAZE00000008
CDS
11775565
11775708
+
GWHAAZE00000008
CDS
11775797
11775916
+
GWHAAZE00000008
CDS
11776334
11776390
+
GWHAAZE00000008
CDS
11776700
11776759
+
GWHAAZE00000008
CDS
11777320
11777427
+
GWHAAZE00000008
CDS
11778076
11778218
+
GWHAAZE00000008
CDS
11778698
11778776
+
GWHAAZE00000008
CDS
11779827
11779889
+
GWHAAZE00000008
CDS
11780076
11780206
+
GWHAAZE00000008
CDS
11780827
11780932
+
GWHAAZE00000008
CDS
11781616
11781804
+
GWHAAZE00000008
CDS
11781938
11782165
+
GWHAAZE00000008
CDS
11782408
11782563
+
GWHAAZE00000008
CDS
11783933
11784052
+
GWHAAZE00000008
CDS
11784405
11784578
+
Transcript Sequence
>GWHTAAZE026940 ATGGAAGCGGGAAGGCAGGTCTTTTCTGTGGATCTGCTTGAGAGGTATGCAGCAAAGGGCCGTGGAGTTATAACATGTATGGCTGCAGGGAATGATGTCATTGTTTTGGGAACAAGTAAAGGATGGGTCATTAGACATGATTTTGGAGTTGGCGATTCTTATGATATTGATCTTTCCATGGGTCGACCTGGGGAGCAATCCATCCATAGAGTTTTCGTTGATCCGGGTGGGAGCCACTGTATTGCCACTGTTATGGGTGATGGAGGTGCTGATACGTTTTATACTCATGCAAAATGGACTAAGCCCCGTGTTTTAAACAAGCTGAATGGTCTTGTGGTGAATGCTGTTGCCTGGAATAGACAACAAATAACAGAAGCTTCTACTCGGGAAGTCATTCTTGGTACGAACAATGGCCAACTGCATGAAATTTCTGTAGACGAGAAAGATAAGAAAGAGAAGTATATTAAGTTTCTATTCGAACTAGCAGAACTTCCAGAAGCATTCACGGGTTTACAGATGGAATCAGCTAGCATTAGCAGTGGAACTAGATATTATGTAATGGCTGTTACTCCTACACGACTTTATTCATTCACCGGAATTGGGTTGCTGGAGATCGTGCAGTGCACTTTATGGAACTTCCAGGAGAAATACAAAACAGGCAATGAACTGCATTTCTTTATGAGGCAAAGAAGAGCTGAACATTTTGCATGGCTTTCTGGAGCTGGTATCTATCACGGTGACCTAAATTTTGGAGCACAGCATAGTTCACAAAAGGGGGATGAGAATTTTATTGAGAACAAGGCTCTTTTGGACTATTCTAAGTTAGGTGAGGGTGCTGAAGCGCCTAAGCCCAGTTCACTTGCAGTTTCTGAATATCACTTTCTGCTTCTCATTGGAGATAAGGTTAAGGTTGTGAATAGAATTAGTGAGCAGATCGTTGAAGAACTTCATTTTGATCAAACACCTGAACTGGTTACCCGGGGAATTATTGGATTATGCAGTGATGCCTCTGCAGGATTGTTTTATGCATATGACCATAACTCAATCTTCCAGGTCTCTGTAAATGATGAAGGCCGAGACATGTGGAAGGTGTACCTAAACCTAAAGGAGTATGGTGCAGCTTTGGAAAACTGTCGTGATCCGTTCCAGCGAGACCAAGTATACTTAGAGCAGGCCGAAGATGCATTTTCCGCCAAGGATTTTTTTAGAGCATCATCTTTTTATGCAAAAATCAATTATATATTGTCCTTTGAAGAGATCACGCTGAAGTTTATTAGCATTGGCGAACAGGATGCTTTGAGAACTTTCTTGCTGCGGAAGCTCGATAATCTTGAAAAGGACGATAAATGTCAGATAACAATGATATCCACATGGGCCACTGAACTATACCTGGACAAGATCAATCGATTACTTCTAGAAGATGAGACTACTTCAGAGAATTCTAGTTCAGAGTACCAATTGATCATGAAGGAGTTCCGTGCCTTTCTCAGTGATGGCAAGGATGTGTTGGATGAGGCAACTACAATGAAGCTACTAGAAAGTTATGGTAGAGTTGACGAGTTGGTATATTTTGCTAGTTTGAAGGAGCAGTACGAGATTGTGATTCACCATTATATTCAGCTAGGAGAAGCAAAGAAAGCATTGGCAGCGCTCCATAAACCTGCAGTTCCTATAGATCTTCAGTACAAGTTTGCGCCAGATCTGATCATGCTTGATGCTTATGAAACTGTTGAGTCATGGATGATCACTAAAAATCTGAACCCGAGAAAGCTGATTCCAGCAATGATGCGTTATTCAAATGAACCTCATGCAAAGAATGAAGCCCATGAAGTAATAAAGTATTTGGAATTTTGTGTTCATCGTTTGCAGAATGAAGATCCTGGTGTTCACAATTTGTTGCTCTCTTTGTACGCGAAGCAGGATGATGACAGTGCCCTTCTGCGTTTCCTACAATGCAAATTTGGCAAAGGACGAGATACTGGCCCTGATTTCTTCTATGATCCAAAATATGCCTTGCGCCTTTGTCTCAAGGAAAAGAGGATGCGGGCCTGTGTTCATATATACAGTATGATGTCCATGCATGAAGAAGCAGTTGCCCTGGCTCTTCAGGTTGATCCAGAGCTAGCTATGGCGGAAGCTGACAAGGTCGAAGACGATGAAGATTTGAGGAAGAAGCTGTGGCTTATGATTGCCAAGCATGTTGTTGAACAAGAAAAGGGAACTAAAAGGGAGAACATTCGAAAGGCAATAGCGTTTCTCAAGGAAACTGATGGGCTGTTAAAGATTGAAGATATTTTACCATTCTTTCCAGATTTTGCTCTGATTGATGACTTCAAGGAGGCAATTTGTTCAGCATTGGAGGATTACAACCAGCAAATTGAAAATTTGAAAGAGGAAATGAATGATGCAACACGTGGCACCGACAACATTAGGAATGATATCAGTGCACTCGCTCAACGATATGCTGTCATTGAACATGACGAGGAATGTGGGGCAGAACATATACTGGATCTGCAGAAGCAGCTTATGGTATTATGTGGTGAATCCAGGGAACAATTAAATGGTGGCTTAACACAGGATGAAACAGTAACAAACATGACCCCTGTGGATAAGATTCGATCACAGCTGGATGATGCTATAGCAAGTGAATGCCCATATTGTGGGGACTTGATGATAGGTGAAATCTCTTTGCCTTTTATCCTCACAGAGGAAGCACAGCAGGTTACTTCATGGGAGATAAAGCTGCATAATCTTGGAACTCAGAAGAGCCTTTCTTTAGCTGTTTGA
Network for GWHGAAZE026906
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF05131.15
Pep3_Vps18
242
396
6.20E-39
PF00637.21
Clathrin
601
739
2.30E-11
Protein Sequence
>GWHPAAZE026924 MEAGRQVFSVDLLERYAAKGRGVITCMAAGNDVIVLGTSKGWVIRHDFGVGDSYDIDLSMGRPGEQSIHRVFVDPGGSHCIATVMGDGGADTFYTHAKWTKPRVLNKLNGLVVNAVAWNRQQITEASTREVILGTNNGQLHEISVDEKDKKEKYIKFLFELAELPEAFTGLQMESASISSGTRYYVMAVTPTRLYSFTGIGLLEIVQCTLWNFQEKYKTGNELHFFMRQRRAEHFAWLSGAGIYHGDLNFGAQHSSQKGDENFIENKALLDYSKLGEGAEAPKPSSLAVSEYHFLLLIGDKVKVVNRISEQIVEELHFDQTPELVTRGIIGLCSDASAGLFYAYDHNSIFQVSVNDEGRDMWKVYLNLKEYGAALENCRDPFQRDQVYLEQAEDAFSAKDFFRASSFYAKINYILSFEEITLKFISIGEQDALRTFLLRKLDNLEKDDKCQITMISTWATELYLDKINRLLLEDETTSENSSSEYQLIMKEFRAFLSDGKDVLDEATTMKLLESYGRVDELVYFASLKEQYEIVIHHYIQLGEAKKALAALHKPAVPIDLQYKFAPDLIMLDAYETVESWMITKNLNPRKLIPAMMRYSNEPHAKNEAHEVIKYLEFCVHRLQNEDPGVHNLLLSLYAKQDDDSALLRFLQCKFGKGRDTGPDFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMIAKHVVEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSALEDYNQQIENLKEEMNDATRGTDNIRNDISALAQRYAVIEHDEECGAEHILDLQKQLMVLCGESREQLNGGLTQDETVTNMTPVDKIRSQLDDAIASECPYCGDLMIGEISLPFILTEEAQQVTSWEIKLHNLGTQKSLSLAV
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K20181
VPS18, PEP3
Autophagy - yeast
map04138
Gene Ontology
GO term
Ontology
Name
GO:0006886
biological_process
intracellular protein transport
GO:0016192
biological_process
vesicle-mediated transport
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
40.616
SRR3591706
second leaf
19.308
SRR3591707
mature leaf
16.292
SRR3591708
Shoot apex
32.124
SRR3591709
Stem
36.912
SRR3591710
White floral bud
15.222
SRR3591711
White flower
16.619
SRR3591712
Green floral bud
21.140
SRR3591713
Yellow flower
14.414
SRP173429
SRR8316895
Juvenile bud stage
17.502
SRR8316896
Juvenile bud stage
22.826
SRR8316897
Juvenile bud stage
9.375
SRR8316894
Third green stage
8.822
SRR8316900
Third green stage
23.284
SRR8316901
Third green stage
19.986
SRR8316898
Complete white stage
6.603
SRR8316899
Complete white stage
24.311
SRR8316903
Complete white stage
14.043
SRR8316902
Silver flowering stage
5.839
SRR8316904
Silver flowering stage
8.499
SRR8316905
Silver flowering stage
3.796
SRR8316906
Gold flowering stage
13.682
SRR8316907
Gold flowering stage
12.562
SRR8316908
Gold flowering stage
14.373
SRP132670
SRR6706286
Control
18.710
SRR6706287
Light intensity 50%
18.695
SRR6706288
Light intensity 20%
19.646
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
11.576
CNS0095593
Slightly white alabastrum(diploid) 2
10.814
CNS0095594
Slightly white alabastrum(diploid) 3
10.968
CNS0095595
Whole white alabastrum(diploid) 2
9.374
CNS0095596
Whole white alabastrum(diploid) 3
7.689
CNS0095597
Whole white alabastrum(diploid) 4
8.747
CNS0095598
Silvery flower (diploied) 1
17.805
CNS0095599
Silvery flower (diploied) 2
16.192
CNS0095600
Silvery flower (diploied) 3
19.252
CNS0095601
Golden flower (diploid) 1
19.622
CNS0095602
Golden flower (diploid) 2
23.601
CNS0095603
Golden flower (diploid) 3
23.091
CNS0095604
Slightly white alabastrum(tetraploid) 1
16.249
CNS0095605
Slightly white alabastrum(tetraploid) 2
12.307
CNS0095606
Slightly white alabastrum(tetraploid) 3
32.620
CNS0095607
Whole white alabastrum(tetraploid) 1
9.651
CNS0095608
Whole white alabastrum(tetraploid) 2
7.047
CNS0095609
Whole white alabastrum(tetraploid) 3
21.395
CNS0095610
Silvery flower (tetraploid) 1
24.479
CNS0095611
Silvery flower (tetraploid) 2
25.454
CNS0095612
Silvery flower (tetraploid) 3
19.507
CNS0095613
Golden flower (tetraploid) 1
11.094
CNS0095614
Golden flower (tetraploid) 2
20.860
CNS0095615
Golden flower (tetraploid) 3
13.751
CRA001975
CRR073297
Stem 1
20.922
CRR073298
Stem 2
19.272
CRR073299
Stem 3
14.889
CRR073300
Leaf 1
20.074
CRR073301
Leaf 2
16.691
CRR073302
Leaf 3
16.108
CRR073303
Juvenile bud 1
17.411
CRR073304
Juvenile bud 2
11.180
CRR073305
Juvenile bud 3
23.469
CRR073306
Third green 1
3.396
CRR073307
Third green 2
3.162
CRR073308
Third green 3
4.250
CRR073309
Second white 1
4.258
CRR073310
Second white 2
5.078
CRR073311
Second white 3
4.208
CRR073312
Silver flowering 1
2.960
CRR073313
Silver flowering 2
3.927
CRR073314
Silver flowering 3
3.114
CRR073315
Gold flowering 1
5.238
CRR073316
Gold flowering 2
11.605
CRR073317
Gold flowering 3
4.829
CRR073318
Tawny withering 1
17.407
CRR073319
Tawny withering 2
14.230
CRR073320
Tawny withering 3
20.394