Gene detail

Detail information of GWHGAAZE026910

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11902.1	5.0119E-143	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	7E-69	Transcription factor MYB39
trEMBL	tr\|A0A068UUB7\|A0A068UUB7_COFCA	2E-143	Coffea canephora DH200=94 genomic scaffold, scaffold_60 {ECO:0000313\|EMBL:CDP11902.1}
TAIR10	AT4G21440.1	9E-80	MYB-like 102

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11912314	11913655	+
GWHAAZE00000008	mRNA	11912314	11913655	+
GWHAAZE00000008	exon	11912314	11912446	+
GWHAAZE00000008	exon	11912702	11912831	+
GWHAAZE00000008	exon	11912944	11913655	+
GWHAAZE00000008	CDS	11912314	11912446	+
GWHAAZE00000008	CDS	11912702	11912831	+
GWHAAZE00000008	CDS	11912944	11913655	+

Transcript Sequence
>GWHTAAZE026944 ATGGGTAGAACACCTTGTTGTGATAAAAATGGACTCAAGAAAGGTCCGTGGACCCAAGAAGAGGATCACAAACTCATGCAGTATATTCAGACTCATGGTCCTGGCAACTGGCGCAACCTCCCCAAAAACGCCGGGCTTCAAAGATGTGGAAAGAGTTGTCGTCTTCGATGGACAAACTACTTGAGGCCTGATATCAAAAGAGGAAGATTCTCATTTGAAGAAGAAGAGACTATTATTCAGTTGCATAGTGTTCTTGGCAACAAGTGGTCCGCAATTGCAGCTAGATTACCGGGAAGAACTGACAATGAAATAAAGAATTACTGGAACACGCACATAAGAAAAAGGCTCCTTCGAATGGGTATTGATCCAGTAACTCATAGTCCTCGCCTCGATCTTCTTGACTTATCATCTCTTATCAATTCAGCTCAGCTCAACTTATCGAATTTTCTGGGCCTCCAAACACTAGTAAACCCGGATGTGGTAAGGCTTGCAACTTTCCTAGCATCCAATCAAGAAAACCCAGAGTTAGTATTACAAAAGCTTCAAGAAAACCAACTTTACAATACCCAATTGCAAAACTCATCCCCCATAATCCAATCCAACCAATTTCAATCTCCTAATCAAGAAATCCCATCTTCAATGAACGGAAACATTGGTCAATTTTCGGAAAATTTGACGAATTTGGGCGGCCAAATTTTCCAGGAAAATTTGGGTCCTTCAATTTTAAATGAAAGTCCTGTTACACTACCAAGTTTTGGATATTGTGAGTCTGATCAAATTAAAACAAATGTGTCCTCGGAAAACTCAAATTTTTGCTTTGACTCTCTTATGTCAACGCCTTTATCAAGCTCGACACCATTGAACTCGTCGTCCACGTTCATCAATAGCAGCACTGAGGATGAGAGAGAAAGCTACTGCAGCAAATTGTTCAAGTTTGAAATTCCAGAGAGTTTAGACTTTGATGATTTTATGTAA

Network for GWHGAAZE026910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.00E-14
PF00249.32	Myb_DNA-binding	67	111	2.90E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.180
	SRR3591706	second leaf	0.077
	SRR3591707	mature leaf	0.531
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.101
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.850
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	3.114
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.366
	SRR8316897	Juvenile bud stage	0.044
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.066
	SRR8316901	Third green stage	0.038
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.247
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.638
	SRR8316904	Silver flowering stage	0.460
	SRR8316905	Silver flowering stage	0.102
	SRR8316906	Gold flowering stage	1.962
	SRR8316907	Gold flowering stage	1.613
	SRR8316908	Gold flowering stage	3.259
SRP132670	SRR6706286	Control	0.050
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.023
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.035
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.375
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.118
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.315
	CNS0095600	Silvery flower (diploied) 3	0.132
	CNS0095601	Golden flower (diploid) 1	1.051
	CNS0095602	Golden flower (diploid) 2	0.731
	CNS0095603	Golden flower (diploid) 3	0.837
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.171
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.238
	CNS0095611	Silvery flower (tetraploid) 2	0.195
	CNS0095612	Silvery flower (tetraploid) 3	0.912
	CNS0095613	Golden flower (tetraploid) 1	0.300
	CNS0095614	Golden flower (tetraploid) 2	0.748
	CNS0095615	Golden flower (tetraploid) 3	0.492
CRA001975	CRR073297	Stem 1	0.083
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.150
	CRR073301	Leaf 2	0.325
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.059
	CRR073309	Second white 1	0.106
	CRR073310	Second white 2	0.942
	CRR073311	Second white 3	1.326
	CRR073312	Silver flowering 1	1.490
	CRR073313	Silver flowering 2	1.529
	CRR073314	Silver flowering 3	3.175
	CRR073315	Gold flowering 1	0.047
	CRR073316	Gold flowering 2	0.343
	CRR073317	Gold flowering 3	0.240
	CRR073318	Tawny withering 1	1.069
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.184