Gene detail

Detail information of GWHGAAZE026920

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGB05613.1	7.9646E-139	sesquiterpene synthase 4 [Valeriana officinalis]
Swissprot	tr\|Q6USK1\|GERS_OCIBA	1E-110	Geraniol synthase, chloroplastic (Precursor)
trEMBL	tr\|L0HR59\|L0HR59_VALOF	3E-139	Sesquiterpene synthase 4 {ECO:0000313\|EMBL:AGB05613.1}
TAIR10	AT1G61680.2	2E-44	terpene synthase 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12088298	12091792	-
GWHAAZE00000008	mRNA	12088298	12091792	-
GWHAAZE00000008	exon	12088298	12088582	-
GWHAAZE00000008	exon	12089127	12089378	-
GWHAAZE00000008	exon	12089879	12090017	-
GWHAAZE00000008	exon	12091653	12091792	-
GWHAAZE00000008	CDS	12091653	12091792	-
GWHAAZE00000008	CDS	12089879	12090017	-
GWHAAZE00000008	CDS	12089127	12089378	-
GWHAAZE00000008	CDS	12088298	12088582	-

Transcript Sequence
>GWHTAAZE026954 ATGGCAAGGTTGGAGTCAAGAAGGTATATTGAAGAGTATGGCAGAGAAAGTGGCCACAACTTAGCCTTGCTGGAATTAGCAAAGCTTGATTACAACAATGTCCAATCACTTCACCAACTGGAGTTAGCTGAGATTTCAAGATGGGACCTTAATGCAATGGAAGAGCTTCCCGAATACATGAAAATATGTTACATGGCATTGTACAACACTACCAACGAAATTTGCTACAAGGTTCTCAAAGAAAATGGATGGAGTGTCCTCCCTTACCTTAAACGAACGTGGATAGACATGATTGAAGGTTTTATGCTGGAAGCAGAGTGGTTAAACAGTGGACATGTACCAAACTTGGAAGAGTACATAGAAAATGGGGTTACAACAGCAGGGTCTTACATGGCTTTGGTGCACCTATTCTTTCTCATAGGGGAAGGGGTTACCGATGATAATGTGAAATTACTATTGGACCCTTACCCTAAACTCTTCTCTTGCTCCGGCCGGATTCTTAGACTTTGGGATGATTTGGGAACTGCCAAGGAGGAACAAGAGAGAGGGGATGTAGCATCAAGCATACAATTGTTTATGAGGGAGAATAATGTTTCATCAGAGGGTGAAGCAAGAAAACAAATAATTGAGATAATTCAGGGGTTATGGAAAGAATTGAATGGGGAGTTAATGGGTCCAAATGCATTGCCACTACCAATCATCAAGACTTCATTCAACATGGCCAGAACTTCACAAGTTGTTTACCAACACGATGAAGATAGTTATTTCTCCAGCGTTGATAGTTATGTGCAATCTCTCTTCTTTACCCCCATTTGA

Network for GWHGAAZE026920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03936.17	Terpene_synth_C	45	218	2.70E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.672
	SRR3591706	second leaf	177.187
	SRR3591707	mature leaf	42.508
	SRR3591708	Shoot apex	85.019
	SRR3591709	Stem	1.357
	SRR3591710	White floral bud	0.734
	SRR3591711	White flower	0.223
	SRR3591712	Green floral bud	15.482
	SRR3591713	Yellow flower	0.023
SRP173429	SRR8316895	Juvenile bud stage	70.159
	SRR8316896	Juvenile bud stage	50.986
	SRR8316897	Juvenile bud stage	30.138
	SRR8316894	Third green stage	7.636
	SRR8316900	Third green stage	2.089
	SRR8316901	Third green stage	3.548
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	5.923
	SRR8316903	Complete white stage	0.470
	SRR8316902	Silver flowering stage	0.090
	SRR8316904	Silver flowering stage	0.006
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.629
	SRR6706287	Light intensity 50%	0.874
	SRR6706288	Light intensity 20%	0.746
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	122.990
	CNS0095593	Slightly white alabastrum(diploid) 2	66.818
	CNS0095594	Slightly white alabastrum(diploid) 3	96.499
	CNS0095595	Whole white alabastrum(diploid) 2	87.763
	CNS0095596	Whole white alabastrum(diploid) 3	7.199
	CNS0095597	Whole white alabastrum(diploid) 4	45.665
	CNS0095598	Silvery flower (diploied) 1	8.481
	CNS0095599	Silvery flower (diploied) 2	10.799
	CNS0095600	Silvery flower (diploied) 3	0.249
	CNS0095601	Golden flower (diploid) 1	0.166
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.088
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.589
	CNS0095605	Slightly white alabastrum(tetraploid) 2	105.760
	CNS0095606	Slightly white alabastrum(tetraploid) 3	221.490
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.066
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.144
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.645
	CNS0095610	Silvery flower (tetraploid) 1	0.354
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.232
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.012
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	22.360
	CRR073298	Stem 2	21.522
	CRR073299	Stem 3	21.006
	CRR073300	Leaf 1	2.003
	CRR073301	Leaf 2	1.352
	CRR073302	Leaf 3	1.413
	CRR073303	Juvenile bud 1	2.101
	CRR073304	Juvenile bud 2	0.085
	CRR073305	Juvenile bud 3	1.648
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.164
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.321
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.027
	CRR073315	Gold flowering 1	8.564
	CRR073316	Gold flowering 2	15.251
	CRR073317	Gold flowering 3	15.025
	CRR073318	Tawny withering 1	69.418
	CRR073319	Tawny withering 2	28.861
	CRR073320	Tawny withering 3	151.841