Gene detail

Detail information of GWHGAAZE026923

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008439944.1	6.55379E-62	PREDICTED: mediator-associated protein 1 [Cucumis melo]
Swissprot	tr\|Q9SB42\|MDA1_ARATH	1E-22	Mediator-associated protein 1
trEMBL	tr\|A0A0A0KN49\|A0A0A0KN49_CUCSA	1E-60	Transcription regulator {ECO:0000313\|EMBL:KGN49156.1}
TAIR10	AT1G61730.1	5E-24	DNA-binding storekeeper protein-related transcriptional regulator

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12168192	12169407	-
GWHAAZE00000008	mRNA	12168192	12169407	-
GWHAAZE00000008	exon	12169377	12169407	-
GWHAAZE00000008	exon	12169177	12169255	-
GWHAAZE00000008	exon	12168192	12169140	-
GWHAAZE00000008	CDS	12169377	12169407	-
GWHAAZE00000008	CDS	12169177	12169255	-
GWHAAZE00000008	CDS	12168192	12169140	-

Transcript Sequence
>GWHTAAZE026957 CCCCGTCCAAGTCCAAATCCAAACAACTACAAGAAGAAACCCTCTGTCCAAAAACCCAAATCCGAATCTGAGTTCGGCGATGATGATTCCGCCTCGGAATCCGATTCCGGAATCAAGCCCATTCTCACCAAACAGATGCCTAATTCCTCCGACCCCAAGAAACCGGCGATGAAGCCCGCCGGCAAGTCATCCTCCACTCTGGTGAAACCCACCGGAAAGAGACCGGCGGAGACCCAACAGAATGGAAAGGATTCGAGGGGAAAGAAGTGTAAGGTGCCGAATAAGGATGAAGAGGATGGTAGAACTGAGGAAAAAATAGAGGAGAAGAAATCTGCAATTACTCGGCTTTGGACTGAGAAAGATGAAGTTACTGTGTTAAACGGGATGATTCGTTACAAATCGGAAAAAGAGTCGGACCCTTATGCAGATTTGGGTGCTTTTCACGAGTTTGTTAAGGATTCACTTCGAGCCGAAGTTTCGAAGAATCAGTTGACTGATAAGATTAGGAGGTTGAAGAAAAAGTATCTAAATAATGCCGAGAAAGGAGAGAATGGTGAGGACCCTGTTTTTTCTAGGCCTCATGAGTACAAGACCTTTGAGATTTCCAAGAAGATTTGGGGAAATGGAGGTGCAATTACTAATGAAGGCAATGGAGGGGATGTGGATAATGGTACAAGTAATAACAGCACAGCTAGAAAGAGTAGGAAAATCGAAACCATCGAGGCTAAGCCAAAAGAAGAACCGAAAGCTATTGTTACATTAGTAGAACCCGTGAAAGATGAACCAATGGCTGATGAGAAAGATTTTTTTTCTACTTATCCAAGATTGTACCAAGGGTTTAATATGGAGAATTCTGTTTATCTACCATTGTCTGATGATGGAAGGAGGTTTTTGAAGGAGAATATAAGTTTGATTGGGAGTTCCAAGGCAAAGGAGTTGGATATTAAGTGGAGGAATTTGCAGGTGGAGGAATTTGAGTTGTACTCAAAGAGGATGGAGCTGATTACTGAACAGAGTAAACTTTTGGTGGATGCAGTCAAGTCATCTAAGGATTGGTAA

Network for GWHGAAZE026923

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04504.15	DUF573	114	207	2.00E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GeBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.040
	SRR3591706	second leaf	5.757
	SRR3591707	mature leaf	6.288
	SRR3591708	Shoot apex	13.523
	SRR3591709	Stem	8.594
	SRR3591710	White floral bud	11.146
	SRR3591711	White flower	22.259
	SRR3591712	Green floral bud	23.503
	SRR3591713	Yellow flower	11.457
SRP173429	SRR8316895	Juvenile bud stage	17.314
	SRR8316896	Juvenile bud stage	21.623
	SRR8316897	Juvenile bud stage	7.094
	SRR8316894	Third green stage	7.454
	SRR8316900	Third green stage	22.852
	SRR8316901	Third green stage	23.041
	SRR8316898	Complete white stage	3.327
	SRR8316899	Complete white stage	22.603
	SRR8316903	Complete white stage	6.035
	SRR8316902	Silver flowering stage	5.505
	SRR8316904	Silver flowering stage	6.791
	SRR8316905	Silver flowering stage	1.701
	SRR8316906	Gold flowering stage	7.275
	SRR8316907	Gold flowering stage	7.409
	SRR8316908	Gold flowering stage	8.523
SRP132670	SRR6706286	Control	10.929
	SRR6706287	Light intensity 50%	12.338
	SRR6706288	Light intensity 20%	11.963
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.490
	CNS0095593	Slightly white alabastrum(diploid) 2	18.336
	CNS0095594	Slightly white alabastrum(diploid) 3	16.501
	CNS0095595	Whole white alabastrum(diploid) 2	12.265
	CNS0095596	Whole white alabastrum(diploid) 3	15.288
	CNS0095597	Whole white alabastrum(diploid) 4	10.194
	CNS0095598	Silvery flower (diploied) 1	13.589
	CNS0095599	Silvery flower (diploied) 2	9.984
	CNS0095600	Silvery flower (diploied) 3	8.277
	CNS0095601	Golden flower (diploid) 1	6.780
	CNS0095602	Golden flower (diploid) 2	5.540
	CNS0095603	Golden flower (diploid) 3	6.505
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.861
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.296
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.972
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.979
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.856
	CNS0095610	Silvery flower (tetraploid) 1	10.575
	CNS0095611	Silvery flower (tetraploid) 2	8.496
	CNS0095612	Silvery flower (tetraploid) 3	5.762
	CNS0095613	Golden flower (tetraploid) 1	4.021
	CNS0095614	Golden flower (tetraploid) 2	8.833
	CNS0095615	Golden flower (tetraploid) 3	3.718
CRA001975	CRR073297	Stem 1	14.120
	CRR073298	Stem 2	14.013
	CRR073299	Stem 3	10.635
	CRR073300	Leaf 1	11.001
	CRR073301	Leaf 2	13.501
	CRR073302	Leaf 3	7.465
	CRR073303	Juvenile bud 1	11.402
	CRR073304	Juvenile bud 2	4.632
	CRR073305	Juvenile bud 3	8.675
	CRR073306	Third green 1	1.271
	CRR073307	Third green 2	1.257
	CRR073308	Third green 3	2.875
	CRR073309	Second white 1	3.384
	CRR073310	Second white 2	3.787
	CRR073311	Second white 3	2.699
	CRR073312	Silver flowering 1	1.106
	CRR073313	Silver flowering 2	1.924
	CRR073314	Silver flowering 3	2.091
	CRR073315	Gold flowering 1	6.481
	CRR073316	Gold flowering 2	6.566
	CRR073317	Gold flowering 3	3.638
	CRR073318	Tawny withering 1	12.522
	CRR073319	Tawny withering 2	12.783
	CRR073320	Tawny withering 3	18.229