Gene detail

Detail information of GWHGAAZE026927

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11818.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LJ44\|COL12_ARATH	7E-98	Zinc finger protein CONSTANS-LIKE 12
trEMBL	tr\|A0A068UW26\|A0A068UW26_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_60 {ECO:0000313\|EMBL:CDP11818.1}
TAIR10	AT3G21880.1	5E-43	B-box type zinc finger protein with CCT domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12233116	12235359	-
GWHAAZE00000008	mRNA	12233116	12235359	-
GWHAAZE00000008	exon	12233116	12233248	-
GWHAAZE00000008	exon	12233813	12234159	-
GWHAAZE00000008	exon	12234288	12234521	-
GWHAAZE00000008	exon	12234760	12235359	-
GWHAAZE00000008	CDS	12234760	12235359	-
GWHAAZE00000008	CDS	12234288	12234521	-
GWHAAZE00000008	CDS	12233813	12234159	-
GWHAAZE00000008	CDS	12233116	12233248	-

Transcript Sequence
>GWHTAAZE026961 ATGGATCCTCTTTGTGAGTTTTGCGGAGTTGTGAGGGCAGTGGTGTATTGTAAATCAGATATGGCTCGGCTATGCTTACAGTGTGATGGTTGTGTGCATTCTGCTAATTCTTTGTCCCGTAGGCACCCTCGTTCCCTCATTTGCGACGAGTGTAACTCACAGCCTGCGATTGCGCGCTGTGTGGATGATAAAATGTCTCTGTGTCAGGGTTGTGAGTGGAGTGGCAATGGGTGCTCGGGTCAGGGCCATCGAGTCCGGAAATTGAATTGTTATACTGGATGTCCCTCTATGCAAGAGCTTTCTAGACTTTGTTCTTCAAATCTTGAGTCGTCTTTCCTGAGCGGTGGCTCAGATGGTTCTGGTTCGGGTTCTTTTACTCAAATGAGTAGTTCACTGACTATAAACGAGAATTGCGGCTTGGAGACTAGAGGAAATGAGGAGTCTGTTGGGTTGGTTGCCAGTAGGTTGAACGAATTAGCCTCTGTTAAGTTTGAGCCTTGGGTCGATCCATTGCCAGTAATTCCACCCAATCCTAGTTATGTACCACCACTGGTGAATGGAGATCACGGCATGTTATTTGAGGAATCAAACCTGCAAAAGCTGATGCCTAGTTCTTCCGATTTAAAGGATCTTGGACTTGATGAAGGTGATGATCTCTGTGAAGGAGTTAACATAGATGACGTCACACTGAACTTTGAGAGTAGTTACGAGTTATTTGGCTACTCACAGGGTCACCCTAGATACCAATGTGACGATGCAGCACTGGATTGCATAGTAATGGAGAAAAACTTATCAGTTACTGAATCTAACAGTCATGTAGAAAATGCCATAGAGTCAACATCATCAGGACAACAAGACTGCATGGGTTTTCAATCCTCGCAAGTTGCTGGATCGGCAAGTGTCATGCAGGCTATGAGTGGGAGTGCAAGTTGCATTCTTTTAAATCCGAGCAGCAATAGAAACATTGGCCTCAGCTTTCCAACTGGGCAAGCTGCTTCAAACATGTCACTTTCGCTATCCAACATAACTGGAGAAAGTAGTGCCGCTGATTATCAAGATTGTGGGTTATCGCCAGTATTTATGACGGGCGACTCGCCTTGGGAATCAAGTTTGGAAACTAGTTGTCCACAGGCAAGGGATAAAGCTAAGATGAGATACAAGGAGAAAAAGAAAACACGCACGTTTGGTAAACAAATACGATATGCTTCTCGTAAAGCTAGAGCTGATACTAGAAAACGCGTGAAAGGAAGGTTTGTGAAGGCCGGTGAAGCGTATGACTATGACCCTCTTGTAATAAGGGATAGGAATTTCTGA

Network for GWHGAAZE026927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	379	421	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.466
	SRR3591706	second leaf	0.445
	SRR3591707	mature leaf	0.847
	SRR3591708	Shoot apex	3.461
	SRR3591709	Stem	2.701
	SRR3591710	White floral bud	7.623
	SRR3591711	White flower	3.624
	SRR3591712	Green floral bud	168.243
	SRR3591713	Yellow flower	0.124
SRP173429	SRR8316895	Juvenile bud stage	48.786
	SRR8316896	Juvenile bud stage	156.387
	SRR8316897	Juvenile bud stage	75.617
	SRR8316894	Third green stage	72.512
	SRR8316900	Third green stage	237.321
	SRR8316901	Third green stage	257.581
	SRR8316898	Complete white stage	0.328
	SRR8316899	Complete white stage	6.513
	SRR8316903	Complete white stage	1.674
	SRR8316902	Silver flowering stage	0.589
	SRR8316904	Silver flowering stage	1.287
	SRR8316905	Silver flowering stage	0.272
	SRR8316906	Gold flowering stage	0.213
	SRR8316907	Gold flowering stage	0.107
	SRR8316908	Gold flowering stage	0.435
SRP132670	SRR6706286	Control	59.546
	SRR6706287	Light intensity 50%	61.543
	SRR6706288	Light intensity 20%	55.846
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	175.420
	CNS0095593	Slightly white alabastrum(diploid) 2	144.327
	CNS0095594	Slightly white alabastrum(diploid) 3	204.779
	CNS0095595	Whole white alabastrum(diploid) 2	298.324
	CNS0095596	Whole white alabastrum(diploid) 3	354.403
	CNS0095597	Whole white alabastrum(diploid) 4	321.709
	CNS0095598	Silvery flower (diploied) 1	6.348
	CNS0095599	Silvery flower (diploied) 2	7.259
	CNS0095600	Silvery flower (diploied) 3	2.036
	CNS0095601	Golden flower (diploid) 1	5.314
	CNS0095602	Golden flower (diploid) 2	2.803
	CNS0095603	Golden flower (diploid) 3	2.822
	CNS0095604	Slightly white alabastrum(tetraploid) 1	313.314
	CNS0095605	Slightly white alabastrum(tetraploid) 2	332.396
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.936
	CNS0095607	Whole white alabastrum(tetraploid) 1	328.939
	CNS0095608	Whole white alabastrum(tetraploid) 2	227.522
	CNS0095609	Whole white alabastrum(tetraploid) 3	167.649
	CNS0095610	Silvery flower (tetraploid) 1	1.413
	CNS0095611	Silvery flower (tetraploid) 2	1.449
	CNS0095612	Silvery flower (tetraploid) 3	1.269
	CNS0095613	Golden flower (tetraploid) 1	0.596
	CNS0095614	Golden flower (tetraploid) 2	0.557
	CNS0095615	Golden flower (tetraploid) 3	0.684
CRA001975	CRR073297	Stem 1	73.887
	CRR073298	Stem 2	77.918
	CRR073299	Stem 3	35.552
	CRR073300	Leaf 1	198.611
	CRR073301	Leaf 2	158.156
	CRR073302	Leaf 3	90.101
	CRR073303	Juvenile bud 1	55.323
	CRR073304	Juvenile bud 2	18.801
	CRR073305	Juvenile bud 3	1.726
	CRR073306	Third green 1	5.845
	CRR073307	Third green 2	6.135
	CRR073308	Third green 3	4.264
	CRR073309	Second white 1	0.158
	CRR073310	Second white 2	1.109
	CRR073311	Second white 3	0.750
	CRR073312	Silver flowering 1	5.316
	CRR073313	Silver flowering 2	5.032
	CRR073314	Silver flowering 3	3.467
	CRR073315	Gold flowering 1	6.014
	CRR073316	Gold flowering 2	2.090
	CRR073317	Gold flowering 3	2.881
	CRR073318	Tawny withering 1	6.682
	CRR073319	Tawny withering 2	7.490
	CRR073320	Tawny withering 3	5.069