Gene detail

Detail information of GWHGAAZE026928

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002310464.1	8.6234E-114	cyclin family protein [Populus trichocarpa]
Swissprot	tr\|Q9LJ45\|CCU11_ARATH	2E-78	Cyclin-U1-1
trEMBL	tr\|B9HE32\|B9HE32_POPTR	3E-114	Cyclin family protein {ECO:0000313\|EMBL:EEE90914.1}
TAIR10	AT3G21870.1	3E-55	cyclin p2;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12247661	12249122	+
GWHAAZE00000008	mRNA	12247661	12249122	+
GWHAAZE00000008	exon	12247661	12248058	+
GWHAAZE00000008	exon	12248849	12249122	+
GWHAAZE00000008	CDS	12247661	12248058	+
GWHAAZE00000008	CDS	12248849	12249122	+

Transcript Sequence
>GWHTAAZE026962 ATGTTAGCAGCCGGCGAGGACAACCACCACTGCCGGCAGCCGGAGCCGAGCGAATCCGAGCCCACAACCCCTAGAGTCCTCACCATCCTATCCTTCGTGCTGGAGAAGCTGGTGGCTCGGAACGAGCGGCTCGCTCTCAACTTAAGCCAACAGCAGCAGCTTAACGGCGGGAAGAGATTGAGCGTGTTTGACGGAGTGAGGGCACCGAGTATTAGTATACCAAAGTATTTGGAGAGGATATATAAGTACACGAATTGTAGTCCGTCGTGTTTTGTTGTGGGGTACGTGTACATTGACAGATTGGTGCACAAACACCCGGATTCGCTTGTGGTGTCCATTAATGTTCATAGGTTGCTGGTCACTAGTGTCATGCTTGCTTCTAAGATGCTCGATGATGTCCACTATAACAATGCATTCTATGCGAGGGTTGGAGGAGTGACCAATGCTGAATTAAACAAACTGGAATTAGAGTTTCTATTTTTGTTGGATTTTGGAGTTACAGTAAGCTCTCGAGTCTTCGAAAGCTATTGCCAGCAATTGGAGAAGGAGATGATTTGTAATGGCACTGCCCACAAGATTGAAAGATCTGTCAATACTAATTCTATCGATGATGTTACTGAAATTTCGATTGAAGATACACAAAGTTCTTCCCCGCCGTTAATGGTGGACTGA

Network for GWHGAAZE026928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08613.12	Cyclin	57	165	2.60E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000079	biological_process	regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0019901	molecular_function	protein kinase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.307
	SRR3591706	second leaf	43.023
	SRR3591707	mature leaf	36.132
	SRR3591708	Shoot apex	46.039
	SRR3591709	Stem	9.601
	SRR3591710	White floral bud	2.651
	SRR3591711	White flower	2.640
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	7.354
SRP173429	SRR8316895	Juvenile bud stage	9.229
	SRR8316896	Juvenile bud stage	7.423
	SRR8316897	Juvenile bud stage	4.633
	SRR8316894	Third green stage	1.426
	SRR8316900	Third green stage	2.141
	SRR8316901	Third green stage	2.031
	SRR8316898	Complete white stage	0.974
	SRR8316899	Complete white stage	0.448
	SRR8316903	Complete white stage	2.568
	SRR8316902	Silver flowering stage	0.868
	SRR8316904	Silver flowering stage	0.790
	SRR8316905	Silver flowering stage	0.291
	SRR8316906	Gold flowering stage	0.312
	SRR8316907	Gold flowering stage	0.736
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.009
	SRR6706287	Light intensity 50%	3.784
	SRR6706288	Light intensity 20%	2.903
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.079
	CNS0095593	Slightly white alabastrum(diploid) 2	1.664
	CNS0095594	Slightly white alabastrum(diploid) 3	2.204
	CNS0095595	Whole white alabastrum(diploid) 2	0.738
	CNS0095596	Whole white alabastrum(diploid) 3	2.285
	CNS0095597	Whole white alabastrum(diploid) 4	0.691
	CNS0095598	Silvery flower (diploied) 1	19.163
	CNS0095599	Silvery flower (diploied) 2	19.510
	CNS0095600	Silvery flower (diploied) 3	4.933
	CNS0095601	Golden flower (diploid) 1	27.674
	CNS0095602	Golden flower (diploid) 2	15.036
	CNS0095603	Golden flower (diploid) 3	13.866
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.278
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.274
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.219
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.539
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.543
	CNS0095610	Silvery flower (tetraploid) 1	0.250
	CNS0095611	Silvery flower (tetraploid) 2	1.023
	CNS0095612	Silvery flower (tetraploid) 3	0.059
	CNS0095613	Golden flower (tetraploid) 1	0.202
	CNS0095614	Golden flower (tetraploid) 2	0.305
	CNS0095615	Golden flower (tetraploid) 3	0.298
CRA001975	CRR073297	Stem 1	14.488
	CRR073298	Stem 2	12.648
	CRR073299	Stem 3	12.958
	CRR073300	Leaf 1	3.295
	CRR073301	Leaf 2	2.520
	CRR073302	Leaf 3	2.170
	CRR073303	Juvenile bud 1	1.327
	CRR073304	Juvenile bud 2	1.645
	CRR073305	Juvenile bud 3	1.020
	CRR073306	Third green 1	2.138
	CRR073307	Third green 2	3.950
	CRR073308	Third green 3	1.966
	CRR073309	Second white 1	0.508
	CRR073310	Second white 2	0.485
	CRR073311	Second white 3	0.097
	CRR073312	Silver flowering 1	0.962
	CRR073313	Silver flowering 2	0.191
	CRR073314	Silver flowering 3	0.328
	CRR073315	Gold flowering 1	89.611
	CRR073316	Gold flowering 2	98.969
	CRR073317	Gold flowering 3	79.783
	CRR073318	Tawny withering 1	7.630
	CRR073319	Tawny withering 2	8.715
	CRR073320	Tawny withering 3	6.550