Gene detail

Detail information of GWHGAAZE026930

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043339.1	5.3943E-168	Histone-lysine N-methyltransferase ATXR2 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q5PP37\|ATXR2_ARATH	1E-152	Histone-lysine N-methyltransferase ATXR2
trEMBL	tr\|A0A061E2M7\|A0A061E2M7_THECC	2E-168	Histone-lysine N-methyltransferase ATXR2 isoform 1 {ECO:0000313\|EMBL:EOX99170.1}
TAIR10	AT3G21820.1	8E-124	histone-lysine N-methyltransferase ATXR2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12268323	12271250	+
GWHAAZE00000008	mRNA	12268323	12271250	+
GWHAAZE00000008	exon	12268323	12268461	+
GWHAAZE00000008	exon	12268583	12268614	+
GWHAAZE00000008	exon	12268941	12269086	+
GWHAAZE00000008	exon	12269666	12269753	+
GWHAAZE00000008	exon	12269922	12269970	+
GWHAAZE00000008	exon	12270074	12270128	+
GWHAAZE00000008	exon	12270259	12270328	+
GWHAAZE00000008	exon	12270417	12270486	+
GWHAAZE00000008	exon	12270607	12270683	+
GWHAAZE00000008	exon	12270991	12271047	+
GWHAAZE00000008	exon	12271140	12271250	+
GWHAAZE00000008	CDS	12268323	12268461	+
GWHAAZE00000008	CDS	12268583	12268614	+
GWHAAZE00000008	CDS	12268941	12269086	+
GWHAAZE00000008	CDS	12269666	12269753	+
GWHAAZE00000008	CDS	12269922	12269970	+
GWHAAZE00000008	CDS	12270074	12270128	+
GWHAAZE00000008	CDS	12270259	12270328	+
GWHAAZE00000008	CDS	12270417	12270486	+
GWHAAZE00000008	CDS	12270607	12270683	+
GWHAAZE00000008	CDS	12270991	12271047	+
GWHAAZE00000008	CDS	12271140	12271250	+

Transcript Sequence
>GWHTAAZE026964 ATGACCTTTGGTTGTCATGTTTGTAGCAAATCATGTGCTGAGGCTGACTGGAATTTGTTTCATTCTCTACTTTGTACTGGGGAGGAATCACAAGCAATATGCAAGGACGCACTTTTGAAATTCATCCAACATGCTAATGAAACAAATGATATTTTCCTTCTTGCTGCCAAGGCAATTTCTTCAACCATTTTAAAGTACAGGAAGTTGAGAGCAGAAGCTCGTAATGAAGAACAAGGGAAGTCTACTTTTCTGGGTAGCTGCGATCTCTCTTTGCTTTTGGAGGCATGGAAACCTATATCAATGGGATACAAGAGAAGGTGGTGGGACTGCATTGCTTTGCCTGATGATGTTAATTCTTGTGATGAAGCTGCATTTAGAATGCAAATAAGGCAGCTGGCAATCACGTCACTGGAGCTCCTAAAAGCAGCCATATTTGACAAAGAATGTGAGCCCTTATTCTCCCTCGAAATCTACGGGCATGTTATTGGCATGTTTGAGCTAAATAACCTAGATTTAGTTGTAGCATCTCCGGTGGAGGATTATTTTTTATATATAGATGATTTGCCAGAATCTGAAAAGATAGAAGCCGAGAGAGCAACTCTCCCTGTTCTTGATGCCCTTGGTGATGACTACTCAGCCTGTTGTGAAGGTACTGCATTTTTCCCATTGCAAAGTTGTATGAACCATTCTTGCAATCCTAATTCCAAAGCATTTAAGCGAGAAGAGGACAAGGATGGCCAAGCAACAATAATAGCTCTGAGACCCATATGCAAAGGGGAAGAGGTGACCATATCGTATATAGATGAGGACCTTCCTTTTGAAGAGAGAAAGGCATTGCTTGCAGATTATGGTTTTAGATGCAAATGCGCCAAATGCTTAGAGGAAGCACCATAA

Network for GWHGAAZE026930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	207	266	5.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.407
	SRR3591706	second leaf	14.996
	SRR3591707	mature leaf	8.883
	SRR3591708	Shoot apex	15.410
	SRR3591709	Stem	8.167
	SRR3591710	White floral bud	7.021
	SRR3591711	White flower	7.529
	SRR3591712	Green floral bud	14.212
	SRR3591713	Yellow flower	5.200
SRP173429	SRR8316895	Juvenile bud stage	15.062
	SRR8316896	Juvenile bud stage	25.514
	SRR8316897	Juvenile bud stage	10.335
	SRR8316894	Third green stage	8.641
	SRR8316900	Third green stage	28.799
	SRR8316901	Third green stage	25.591
	SRR8316898	Complete white stage	4.522
	SRR8316899	Complete white stage	31.058
	SRR8316903	Complete white stage	8.121
	SRR8316902	Silver flowering stage	4.108
	SRR8316904	Silver flowering stage	5.628
	SRR8316905	Silver flowering stage	3.474
	SRR8316906	Gold flowering stage	7.544
	SRR8316907	Gold flowering stage	6.220
	SRR8316908	Gold flowering stage	5.538
SRP132670	SRR6706286	Control	4.074
	SRR6706287	Light intensity 50%	5.389
	SRR6706288	Light intensity 20%	6.937
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.798
	CNS0095593	Slightly white alabastrum(diploid) 2	18.293
	CNS0095594	Slightly white alabastrum(diploid) 3	21.660
	CNS0095595	Whole white alabastrum(diploid) 2	18.299
	CNS0095596	Whole white alabastrum(diploid) 3	24.667
	CNS0095597	Whole white alabastrum(diploid) 4	16.067
	CNS0095598	Silvery flower (diploied) 1	17.947
	CNS0095599	Silvery flower (diploied) 2	15.540
	CNS0095600	Silvery flower (diploied) 3	15.234
	CNS0095601	Golden flower (diploid) 1	15.425
	CNS0095602	Golden flower (diploid) 2	11.865
	CNS0095603	Golden flower (diploid) 3	11.126
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.742
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.397
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.911
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.801
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.834
	CNS0095610	Silvery flower (tetraploid) 1	11.137
	CNS0095611	Silvery flower (tetraploid) 2	15.127
	CNS0095612	Silvery flower (tetraploid) 3	5.073
	CNS0095613	Golden flower (tetraploid) 1	4.394
	CNS0095614	Golden flower (tetraploid) 2	6.171
	CNS0095615	Golden flower (tetraploid) 3	1.615
CRA001975	CRR073297	Stem 1	14.395
	CRR073298	Stem 2	10.669
	CRR073299	Stem 3	9.870
	CRR073300	Leaf 1	10.894
	CRR073301	Leaf 2	8.479
	CRR073302	Leaf 3	10.190
	CRR073303	Juvenile bud 1	8.916
	CRR073304	Juvenile bud 2	5.626
	CRR073305	Juvenile bud 3	10.297
	CRR073306	Third green 1	0.733
	CRR073307	Third green 2	1.495
	CRR073308	Third green 3	1.038
	CRR073309	Second white 1	0.840
	CRR073310	Second white 2	1.323
	CRR073311	Second white 3	0.403
	CRR073312	Silver flowering 1	0.402
	CRR073313	Silver flowering 2	0.445
	CRR073314	Silver flowering 3	0.643
	CRR073315	Gold flowering 1	8.617
	CRR073316	Gold flowering 2	16.868
	CRR073317	Gold flowering 3	8.104
	CRR073318	Tawny withering 1	9.443
	CRR073319	Tawny withering 2	13.014
	CRR073320	Tawny withering 3	16.165