Gene detail

Detail information of GWHGAAZE026937

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010657313.1	PREDICTED: homeobox-leucine zipper protein HDG2 isoform X5 [Vitis vinifera]
Swissprot	tr\|Q94C37\|HDG2_ARATH	Homeobox-leucine zipper protein HDG2
trEMBL	tr\|A5C0J7\|A5C0J7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66212.1}
TAIR10	AT1G05230.4	homeodomain GLABROUS 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12420732	12427106	+
GWHAAZE00000008	mRNA	12420732	12427106	+
GWHAAZE00000008	exon	12420732	12420958	+
GWHAAZE00000008	exon	12421091	12421208	+
GWHAAZE00000008	exon	12421364	12421552	+
GWHAAZE00000008	exon	12421771	12422199	+
GWHAAZE00000008	exon	12422287	12422388	+
GWHAAZE00000008	exon	12422881	12423081	+
GWHAAZE00000008	exon	12423184	12423364	+
GWHAAZE00000008	exon	12423547	12423818	+
GWHAAZE00000008	exon	12424696	12424791	+
GWHAAZE00000008	exon	12424895	12425292	+
GWHAAZE00000008	exon	12426964	12427106	+
GWHAAZE00000008	CDS	12420732	12420958	+
GWHAAZE00000008	CDS	12421091	12421208	+
GWHAAZE00000008	CDS	12421364	12421552	+
GWHAAZE00000008	CDS	12421771	12422199	+
GWHAAZE00000008	CDS	12422287	12422388	+
GWHAAZE00000008	CDS	12422881	12423081	+
GWHAAZE00000008	CDS	12423184	12423364	+
GWHAAZE00000008	CDS	12423547	12423818	+
GWHAAZE00000008	CDS	12424696	12424791	+
GWHAAZE00000008	CDS	12424895	12425263	+
GWHAAZE00000008	three_prime_UTR	12425264	12425292	+
GWHAAZE00000008	three_prime_UTR	12426964	12427106	+

Transcript Sequence
>GWHTAAZE026971 ATGCACCAGCCAAATTTGATGGAGGGTCAGATTCACCAACTTGAAATGGCGAATAGTACGTCCGATGGCGATAATGTTATTAGGATGAGAGAGTTTGAAGAGTTTGAAAGCAGATCCGGTAGCGAAAACCAAGAGGCTGCCTCAGGTGAGGATCAACAAAATAATAAGCGTGGTAAAAGAAAGCGATACCACCGCCATACTCAGCATCAGATCCAAGAAATGGAAGCTTTCTTTAAAGAGTGCCCGCACCCGGATGACAAGCAAAGGAAGGAACTAGGCCGCGAATTAGGGTTAGAGCCACTTCAAGTCAAGTTCTGGTTCCAAAACAAGAGAACCCAAATGAAGACCCAACATGAGCGCAGTGAGAATACACAACTCCGAGCAGAGAACGAAAAGCTCCGAGCTGATAACATGAGGTACAGAGAAGCCGTTAGCAACGCGTCGTGCCCTAATTGTGGCGGTCCAACCACCATAGGAGAAATGTCGTTCGATGAACATCAACTGAGGTTGGAGAATTCTCGTTTACGGGAAGAGATCGATAGGATTTCAGCCATAGCTGCAAAGTATGTAGGCAAGCCAATTGCAAACTATCCCATAATTTCCCCTCCAGTTACTCCAAGACCGCTTGATCTAGGGTTTGGGAGTAGTTTTGGAGGGGAAATATATGGAGCAGTGGACCTTCTTAGGTCAATAAGTGGGCCCACTGAAGCGGATAAGCCAATGATAATCGAGCTGGCGGTTGCAGCCATGGAGGAGCTAATAAAAATGGCTCAGATGGGTGAGCCACTATGGATGGTAGGTGGCATTGATGGTTCAACCACTTTGCTTAATGAAGAGGAATACTTTAGGGCATTCCCAAGAGGACTAGGTCTAAGGCCCACCGGGTATAAATGTGAAGCATCTCGAGAAAGTGCTGTTGTTATTATGAATCACATTAACCTTGTTGAGATTCTAATGGAGGTGAATGAGTGGTCGACTTTGTTTTCGGGCATTGTATCGAGGGCTATGACCGTGGAAGTACTATCAACAGGAGTAGCGGGGAACTATAATGGTGCTTTACAAGTGATGACTGCGGAGTTTCAAGTTCCTTCACCTCTGGTTCCCACTCGTGAGAGCTATTTTGTGAGGTACTGTAAGCAACATGTTGATGGAATTTGGGCAGTAGTCGATGTTTCTTTGGACAATTTACGACCTGGTCCTCTAGTGAAATGCCGGAGAAGACCATCTGGATGTTTAATTCAAGAAATGCCAAATGGATACTCGAAGGTAACATGGGTTGAGCATGTAGAAGTGGATGACAGAGGTGTTCATAATTTATACAAGCCGCTAGTTTACAACGGCCTTGCATTTGGAGCAAAGCGATGGGTTGCCACTCTTGATCGACAATGTGAACGCCTCGCAAGCGCCATGGCAACAAATGTTCCTACTAATGATGTTACAAACATTGTGATAACAAATCAAGAAGGAAGAAAGAGTATGTTGAAGTTGGCGGAGAGAATGGTGATCAGCTTTTGTGCAGGAGTTAGCGCATCTACGGCTCATACATGGACAACGTTATCGGGAAGTGGAGCCGATGATGTACGGGTCATGACCCGGAAGAGTGTAGATGACCCAGGTCGGCCTCCGGGCATTGTGTTAAGTGCTGCAACTTCTTTTTGGCTTCCTGTTCCTCCAAAGAGGGTATTTGATTTCCTTCGCGATGAAAACTCGAGAAGTGAGTGGGACATTCTATCTAATGGTGGATTAATACAAGAAATGGCACACATTGCCAATGGGCGCGACACTGGCAACTGCGTATCACTACTGCGAGTAAATAGTGCAAATTCAAGCCAGAGTAACATGCTAATACTACAAGAAAGTTGCTCGGACCCAACAGCCTCCTTTGTGATCTACGCACCAGTGGACGTTGTGGCCATGAATGTGGTGCTAGGTGGTGGCGATCCAGACTACGTGGCCCTACTCCCCTCCGGATTCGCTATACTACCTGATGGACCCACGAGTAATGGGGGTGGAATTGGTGGTGAAAGTGGCTCCGGCGGATCTCTTCTCACTGTGGCATTTCAAATTCTTGTTGATTCAATTCCAACTGCTAAGCTTTCTCTCGGATCAGTCGCAACTGTGAACAATCTCATCTCTTGCACTGTTGATAGGATTAAGGCTGCAATTGCTGGCGAGAACGCGTGATCTACAAGCACAATGATTTAATTAGCTAGTTGTGGAGACAAAAACTCAAAAGAAGAAAGAAGTCAAGAGCGCACCCTACTTTGTTCCTTTGACTATATATATATGGTGTTAATTTGTTTTTGGAACAAATTAAGTCCAACACATTATAAACTTCATTTTTTTTGGGAGGGAT

Network for GWHGAAZE026937

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	60	115	1.40E-17
PF01852.20	START	245	465	2.10E-55

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0008289	molecular_function	lipid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.524
	SRR3591706	second leaf	7.095
	SRR3591707	mature leaf	2.898
	SRR3591708	Shoot apex	14.995
	SRR3591709	Stem	0.491
	SRR3591710	White floral bud	2.024
	SRR3591711	White flower	2.246
	SRR3591712	Green floral bud	2.999
	SRR3591713	Yellow flower	1.327
SRP173429	SRR8316895	Juvenile bud stage	9.630
	SRR8316896	Juvenile bud stage	13.286
	SRR8316897	Juvenile bud stage	4.734
	SRR8316894	Third green stage	3.656
	SRR8316900	Third green stage	4.063
	SRR8316901	Third green stage	3.292
	SRR8316898	Complete white stage	0.742
	SRR8316899	Complete white stage	6.569
	SRR8316903	Complete white stage	0.741
	SRR8316902	Silver flowering stage	0.140
	SRR8316904	Silver flowering stage	0.300
	SRR8316905	Silver flowering stage	0.108
	SRR8316906	Gold flowering stage	0.207
	SRR8316907	Gold flowering stage	0.149
	SRR8316908	Gold flowering stage	0.371
SRP132670	SRR6706286	Control	4.802
	SRR6706287	Light intensity 50%	5.437
	SRR6706288	Light intensity 20%	5.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.956
	CNS0095593	Slightly white alabastrum(diploid) 2	4.619
	CNS0095594	Slightly white alabastrum(diploid) 3	5.339
	CNS0095595	Whole white alabastrum(diploid) 2	4.085
	CNS0095596	Whole white alabastrum(diploid) 3	0.753
	CNS0095597	Whole white alabastrum(diploid) 4	2.677
	CNS0095598	Silvery flower (diploied) 1	4.601
	CNS0095599	Silvery flower (diploied) 2	4.020
	CNS0095600	Silvery flower (diploied) 3	3.348
	CNS0095601	Golden flower (diploid) 1	3.868
	CNS0095602	Golden flower (diploid) 2	3.361
	CNS0095603	Golden flower (diploid) 3	3.083
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.335
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.176
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.894
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.222
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.117
	CNS0095610	Silvery flower (tetraploid) 1	1.506
	CNS0095611	Silvery flower (tetraploid) 2	0.541
	CNS0095612	Silvery flower (tetraploid) 3	0.109
	CNS0095613	Golden flower (tetraploid) 1	0.610
	CNS0095614	Golden flower (tetraploid) 2	0.916
	CNS0095615	Golden flower (tetraploid) 3	0.149
CRA001975	CRR073297	Stem 1	14.290
	CRR073298	Stem 2	10.571
	CRR073299	Stem 3	8.886
	CRR073300	Leaf 1	7.869
	CRR073301	Leaf 2	9.464
	CRR073302	Leaf 3	8.423
	CRR073303	Juvenile bud 1	4.575
	CRR073304	Juvenile bud 2	1.806
	CRR073305	Juvenile bud 3	4.956
	CRR073306	Third green 1	0.548
	CRR073307	Third green 2	0.289
	CRR073308	Third green 3	0.803
	CRR073309	Second white 1	0.442
	CRR073310	Second white 2	0.562
	CRR073311	Second white 3	0.428
	CRR073312	Silver flowering 1	0.513
	CRR073313	Silver flowering 2	0.532
	CRR073314	Silver flowering 3	0.538
	CRR073315	Gold flowering 1	2.465
	CRR073316	Gold flowering 2	3.894
	CRR073317	Gold flowering 3	2.490
	CRR073318	Tawny withering 1	0.040
	CRR073319	Tawny withering 2	0.024
	CRR073320	Tawny withering 3	0.000